HsaEX0013071 @ hg19
Exon Skipping
Gene
ENSG00000153237 | CCDC148
Description
coiled-coil domain containing 148 [Source:HGNC Symbol;Acc:25191]
Coordinates
chr2:159195502-159313265:-
Coord C1 exon
chr2:159312927-159313265
Coord A exon
chr2:159197110-159197192
Coord C2 exon
chr2:159195502-159195597
Length
83 bp
Sequences
Splice sites
3' ss Seq
TGAGATCACATCTATTTCAGATG
3' ss Score
6.94
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
ATAGAGACCGATGCTGTTCAGCGCGAGAGGGCCTGGAGAGGGTGGGTGTGAGAGAGAAGGTGTCTCAGGTCTCGGGCGCGGGAGGGGGTGGCGGAGAGGACAGGGAGATTCCCCAGCGCTGGCTCTGAAATCTGGGGCAGGCTTTCCTTGCCTTACTGCCAATCCCAACTGTGCCTGGTAGGGTTTGTCCCTGGCGTCAAAGGTAGGAACAGCTGAGCCCTTAGATGTACCCCTGACGGCGAGAGCCCAGGAGTGGGCGTTTCACTTTTCCTGCGTTTGGGGAGTCCCTGAGGCTATGCCCTTTGACCTTTGACATGTGTGCAGCTTCTGCTTCTCCAG
Seq A exon
ATGTAAAATGGAATCTGAAATAAAATCCCTTCTCAATGAAGAGAACATTGGAAATGAATGTCTTTGTGACCTTACAAATTTTG
Seq C2 exon
GTTGACTTTGTGAAGAAACAATTGAAAACTGTCTTTGAAAGACTTAGGCTGGAGCAACAGAGAATAGAAAATGATCTTTCAGACTGGAGTATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153237_MULTIEX1-5/8=C1-7
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.236 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF074186=PCEMA1=FE(14.3=100)
C2:
PF074186=PCEMA1=FE(15.8=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGATGTACCCCTGACGGCG
R:
TCTGTTGCTCCAGCCTAAGTCT
Band lengths:
180-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)