BtaEX6009681 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004267 | CCDC148
Description
coiled-coil domain containing 148 [Source:HGNC Symbol;Acc:HGNC:25191]
Coordinates
chr2:38101326-38110123:+
Coord C1 exon
chr2:38101326-38101429
Coord A exon
chr2:38109693-38109775
Coord C2 exon
chr2:38109972-38110123
Length
83 bp
Sequences
Splice sites
3' ss Seq
TAAGATATTGTCTATTTCAGATA
3' ss Score
8.86
5' ss Seq
TTGGTAGGT
5' ss Score
7.03
Exon sequences
Seq C1 exon
ATCAGAAAAACAGTGCAGACTTCAAAGTTATCTAAAGAACAAACACTAATAAAGCAACACAAGCAAGTGTGGTGGCAAGAACACCAAAGGCTAAATGAAGTCAG
Seq A exon
ATACAAAATGGAATCTGAAATAAAATCCTTATTCAGTGAAGAGAACATTGGAAATGAATGTCTTTCTGACCTTATGAATTTTG
Seq C2 exon
AACAGGAGTTATCAGAACAATGGTGCACATATCTTAAAAATGTAATAAATCCTATTCAGCAATTGAGAGAAGATCTAAAATACAGACAGCATCACATTTCACAGTATTCACACTCACACAGTGAATCTAACTCTATGAAAGTATTGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004267-'7-7,'7-6,9-7=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0070316=Glyco_hydro_2=FE(31.8=100)
A:
PF0070316=Glyco_hydro_2=PD(15.9=58.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAAGTGTGGTGGCAAGAA
R:
CACTGTGTGAGTGTGAATACTGTGA
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]