MmuEX0009600 @ mm9
Exon Skipping
Gene
ENSMUSG00000036641 | Ccdc148
Description
coiled-coil domain containing 148 [Source:MGI Symbol;Acc:MGI:3039583]
Coordinates
chr2:58835280-58870048:-
Coord C1 exon
chr2:58869927-58870048
Coord A exon
chr2:58856393-58856475
Coord C2 exon
chr2:58835280-58835418
Length
83 bp
Sequences
Splice sites
3' ss Seq
TGAGATCATGTCTGTTTCAGATG
3' ss Score
8.78
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
ATATCCTGGCAGTCCATATGAAAGATGGAACTAGGAGCTCCCGGTATAAGCCGGTGGACTACCAGCAGTTACGGGCCCTAACCGAAGCCACAAGGTCTGCGTCTGCTTCCACAGAGCAGAAG
Seq A exon
ATGTAAATTGGAGTCTGAAATAAGATCTTGTCTCAATGAGGAGAGCATTGGGAGTGAATGTTTTTGTGAGCTTATGAATTTTG
Seq C2 exon
TAACTTCCAACTAAGTGCAGAAGAGCACTGGACTTACCAGGCTGTCTTAGACCAGTATCCCGGAAATCTCCTTGGCAGAAGAGCTCTGTACTTGGACATGTTGCAAAGATATTTCCCTCACAAGTCCAGGCATCATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036641_MULTIEX1-2/5=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTAACCGAAGCCACAAGGTC
R:
ATGCCTGGACTTGTGAGGGAA
Band lengths:
179-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types