RnoEX0017653 @ rn6
Exon Skipping
Gene
ENSRNOG00000057740 | Ccdc148
Description
coiled-coil domain containing 148 [Source:RGD Symbol;Acc:1561169]
Coordinates
chr3:45112516-45117520:-
Coord C1 exon
chr3:45117417-45117520
Coord A exon
chr3:45112839-45112921
Coord C2 exon
chr3:45112516-45112664
Length
83 bp
Sequences
Splice sites
3' ss Seq
TGAGATCATGTCTGTTTCAGATG
3' ss Score
8.78
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
ATCAGAAAAGCCATGGAGACATCAAGGGCGGCTAAAGAGCAGATGCTGATCAAGCAACACAAGCAGGTGTGGTGGCAGGAACAGGAGAGGCTGAAGGGGATCAG
Seq A exon
ATGTAAATTGGAGTCTGAAATAAGATCTCGTCTCAATGAGGAGAGCATTGGAGATGAATGTTTTTGTGAGCTTATGAATTTTG
Seq C2 exon
AGAAAGAGCTGTCAGAACAATGGTGTGCGTACCTTACAGCTGTCATCGACCCTCTTCATCAGCTGAGAACAGGCCTGAAGAAACAGCGCCACACATTGCAGAGTGCATCTTGCCATAAAGGGCCAGAGTCAACAACGATTCTGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057740-'9-14,'9-13,12-14
Average complexity
S
Mappability confidence:
80%=100=50%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.371 A=0.000 C2=0.160
Domain overlap (PFAM):
C1:
PF048228=Takusan=PD(9.1=14.3)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000091777fB2501
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAACAGGAGAGGCTGAAGG
R:
AATCGTTGTTGACTCTGGCCC
Band lengths:
168-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]