GgaEX6043366 @ galGal3
Exon Skipping
Gene
ENSGALG00000012555 | CCDC148
Description
NA
Coordinates
chr7:37978866-37980730:-
Coord C1 exon
chr7:37980627-37980730
Coord A exon
chr7:37979191-37979273
Coord C2 exon
chr7:37978866-37979029
Length
83 bp
Sequences
Splice sites
3' ss Seq
AACTCATTCATACCTTGCAGGGA
3' ss Score
8.38
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
ATCAAAAAAGTGGAGCAAATTTCAAAAATTAACAAAGAGCAAATGCTACTGAAACAGCATTGCCAGGTGTGGTGGCGAGAGTATAAAAGACTTAGTGAGAACAG
Seq A exon
GGAAAAAGCAGAAGCAGAAATACAGACTCTTCTTGATGAAGGAAGTCATAAGTATGACTTTTTTTTGGATATGTGGGACTTGG
Seq C2 exon
AGCATAAATTGTCACAGGAGCGGGATGCTTACCAAACAGATACTGTGGCTCCTATCTGGCAACTAAGAGAGAATTTGAAATTCTGGCTGACTGAAATGCAGCATTATGTCACAGAAGACTCATCTCTGAGAAACAAGTTCAGTCTAGCTGAGAAGTTACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012555-'5-6,'5-5,6-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTACTGAAACAGCATTGCCA
R:
TAATGCTGCATTTCAGTCAGCCA
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]