HsaEX0013071 @ hg38
Exon Skipping
Gene
ENSG00000153237 | CCDC148
Description
coiled-coil domain containing 148 [Source:HGNC Symbol;Acc:HGNC:25191]
Coordinates
chr2:158340242-158345318:-
Coord C1 exon
chr2:158345215-158345318
Coord A exon
chr2:158340598-158340680
Coord C2 exon
chr2:158340242-158340393
Length
83 bp
Sequences
Splice sites
3' ss Seq
TGAGATCACATCTATTTCAGATG
3' ss Score
6.94
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
ATCAGAAAAGCAATGTTGACTTCAAAGTTATCCAAAGAACAAACACTAATAAAACAACACAAGCAAGTGTGGTGGCAGGAATACCAGAGGCTGAATGAAGTCAG
Seq A exon
ATGTAAAATGGAATCTGAAATAAAATCCCTTCTCAATGAAGAGAACATTGGAAATGAATGTCTTTGTGACCTTACAAATTTTG
Seq C2 exon
AGCAAGAGCTATCAGAACAACAGTGCACATATCTTAAAAATGTAATAAATCCTATTCAGCAGCTGAGAGCAGATCTAAAATACAGACAGCATCACACTTTGCAGCATTCACACCCACATATTGAGTTTAACTCCATGAAAGTATTGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153237-'14-14,'14-13,17-14
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000409187fB11497
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAAGCAAGTGTGGTGGCAG
R:
TATGTGGGTGTGAATGCTGCA
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development