Special

MmuEX0016463 @ mm9

Exon Skipping

Gene
ENSMUSG00000036893 | Ehmt1
Description
euchromatic histone methyltransferase 1 [Source:MGI Symbol;Acc:MGI:1924933]
Coordinates
chr2:24742523-76498361:-
Coord C1 exon
chr2:76498261-76498361
Coord A exon
chr2:24775074-24775174
Coord C2 exon
chr2:24742523-24742589
Length
101 bp
Sequences
Splice sites
3' ss Seq
CGCAGGAGTGGCCGGCCAGCCCC
3' ss Score
-25.44
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
ACTTGGGAGGCAGAGGTAGGCGAATTTCTGAGTTCCAGGCCAGCCTGGTCTATAGAGTGAGTTCCAGGACAGCCAGGCCTATACAGAGAAACCCTGTCTTG
Seq A exon
CCCGCCCCGGACCTAGGCCGCGAGGCGCGGGCGGGGCGATGGCGCGCGGGAGGGGCGGGGCCACGCTGCGGGCCCGGGCCATGGCCGCCGCTGATGCTGAG
Seq C2 exon
CAGGCAGTTCTGGCCAAGCAAGAGACCAAGCAGGATTGCTGCATGAAAACTGAGCTGCTAAGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036893-'0-2,'0-1,1-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=NA
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events







Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr9:140513401-140513501 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GGAGGCAGAGGTAGGCGAATT

				
R: 
TTCCCTTAGCAGCTCAGTTTTCA

				
Band lengths: 
162-263

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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