MmuEX0028084 @ mm9
Exon Skipping
Gene
ENSMUSG00000036792 | Mbd5
Description
methyl-CpG binding domain protein 5 [Source:MGI Symbol;Acc:MGI:2138934]
Coordinates
chr2:49105659-49113832:+
Coord C1 exon
chr2:49105659-49105761
Coord A exon
chr2:49106763-49106943
Coord C2 exon
chr2:49111697-49113832
Length
181 bp
Sequences
Splice sites
3' ss Seq
AATCTGTGGTTTTTTTCCAGGTG
3' ss Score
10.19
5' ss Seq
CAAGTATGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
TCCCAGTGGGTCTTTGTTATCTTGCTTGGACCAGGTTAAGACATACCTGCTCACTGACGGAACATGCAAGTGTGGCTTGGAATGTCCTCTTATTCTTCCCAAG
Seq A exon
GTGTTTAATTTTGATCCTGGAGCTGCTGTGAAGCAGAGAACTGCAGAAGATGTTAAGGCAGATGATGATGTCACAAAGCTATGCATACATAAAAGAAAGATCATTGCAGTGGCCACACTCCATCAAAGCATGGAGGCCCCGCATCCTTCTCTGGTGCTCACCAGTCCTGGAGGAGGAACAA
Seq C2 exon
ATGCAACTCCAGTAGTACCTTCACGGGCGGCAACTCCAAGATCAGTAAGAAACAAGTCTCATGAAGGAATTACAAATTCTGTAATGCCAGAATGTAAGAATCCTTTCAAGTTAATGACTGGATCATCAAATGCCATGGGAAGGCTATACATGCAAGACCTGCCTGGAAGCCAGCAGCAGGAGCTCCACCCTGTCTACCCCCGCCAGAGATTGGGCAGTAGTGAGCATGGACAGAAATCTCCATTTCGTGGCAGCCATGGAGGCCTGCCTAGCCCAGCATCATCAGGGTCTCAGATCTATGGAGATGGCTCAATCTCTCCAAGGACTGACCCGCTCGGAAGCCCTGATGTCTTCACAAGAAATAACCCTGGTTTTCATGGAGCTCCCAATTCCAGCCCTATTCACCTAAATAGGACTCCTCTTTCTCCACCTTCAGTAATGCTACATGGTTCTCCCGTACAGTCATCCTGTGCAATGGCTGGAAGAACTAATATACCTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036792_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.361 C2=0.905
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTGCTCACTGACGGAACA
R:
GTAGACAGGGTGGAGCTCCTG
Band lengths:
257-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: