RnoEX0052983 @ rn6
Exon Skipping
Gene
ENSRNOG00000027596 | Mbd5
Description
methyl-CpG binding domain protein 5 [Source:RGD Symbol;Acc:1562961]
Coordinates
chr3:33444146-33452338:+
Coord C1 exon
chr3:33444146-33444248
Coord A exon
chr3:33445197-33445377
Coord C2 exon
chr3:33450203-33452338
Length
181 bp
Sequences
Splice sites
3' ss Seq
AGAGTCTGGTTTTCTTCCAGGTG
3' ss Score
8.9
5' ss Seq
CAAGTATGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
CCCCAGTGGGTCTCTGTTATCTTGCTTGGACCAGGTTAAGACATACCTGCTTACTGATGGAACATGCAAGTGTGGCTTGGAGTGTCCTCTTATTCTTCCCAAG
Seq A exon
GTGTTTAACTTTGATCCTGGAGCTGCTGTGAAGCAGAGAACGGCAGAAGACGTTAAGGCAGATGACGATGTCACAAAGCTGTGCACACATAAGAGAAAGATCATTGCAGTGGCCACCCTCCACCAAAGCATGGAGGCCCCACACCCTTCTCTGGTGCTCACCAGTCCTGGAGGAGGAACAA
Seq C2 exon
ATGCAGCCCCAGCAGTACCTTCCCGGGCGGCAACTCCAAGATCAGCGAGAAACAAGGCTCATGAAGGAATTACAAATTCCATAATGCCAGAGTGTAAGAATCCTTTCAAGCTAGTGGCTGGATCATCGAATGCCATGGGAAGGTTATACATGCAGGACCTGCCTGGAAGCCAGCAGCAGGAACTCCACACTGTCTACCCCCGCCAGAGATTGGGCAGTAGTGAGCACGGACAGAAATCTCCATTTCGTGGCAGCCATGGAGGCCTGCCCAGCCCAGCGTCATCAGGGTCCCAGATCTATGGAGATGGCTCAATCTCTCCAAGGACTGACCCTCTTGGAAGCCCTGATGTCTTCACAAGAAATAACCCTGGTTTTCATGGAGCTCCCAATTCCAGTCCTATTCACCTGAATAGGACTCCTCTTTCTCCACCTTCAGTAATGCTACATGGTTCTCCCGTACAGTCATCCTGTGCAATGGCTGGAAGAACTAATATACCTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027596_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.426 C2=0.891
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACATGCAAGTGTGGCTT
R:
GGGGGTAGACAGTGTGGAGTT
Band lengths:
247-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]