BtaEX6009918 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019592 | MBD5
Description
methyl-CpG binding domain protein 5 [Source:HGNC Symbol;Acc:HGNC:20444]
Coordinates
chr2:47845124-47852997:-
Coord C1 exon
chr2:47852895-47852997
Coord A exon
chr2:47851620-47851800
Coord C2 exon
chr2:47845124-47847256
Length
181 bp
Sequences
Splice sites
3' ss Seq
AAAGGCTGTGCTTTTTCCAGGTG
3' ss Score
8.56
5' ss Seq
CAAGTATGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
TCCCAGTGGGTCTTTGTTATCTTGCTTGGAGCAGGTTAAAACATACCTGCTTACTGACGGAACATGCAAGTGTGGCTTGGAATGTCCTCTTATTCTTCCCAAG
Seq A exon
GTGTTTAATTTTGATCCTGGAGCTGCTGTGAAACAAAGAACTGCAGAAGATGTTAAAGCAGATGAAGATGTCACAAAGCTATGCATACATAAAAGAAAAATCATTGCAGTGGCCACACTTCATAAAAGCATGGAAACCCCACACCCTTCTCTGGTGCTCACCAGTCCCGGAGGAGGAACAA
Seq C2 exon
ATGCAACTCCAGTAGTACCTTCACGGGCAGCAACTCCAAGATCTGTAAGAAATAAGTCACATGAAGGAATTACAAATTCTGTAATGCCTGAATGTAAGAATCCTTTCAAGTTAATGATTGGATCATCAAACACCATGGGAAGACTATATGTACAAGAACTGCCTGGAAGCCAGCAACAGGAACCCCACCCTGTCTACCCCCGGCAGAGATTGGGCAGCAATGAGCATGGACAGAAGTCTCCATTCCGTGGCAGCCATGGAGGCCTGCCCAGCCCCGCGTCGTCAGGTTCCCAGATATATGGAGACGGCTCGATCTCGCCAAGGACTGACCCACTCGGAAGCCCTGATGTCTTCACAAGAAATAATCCTGGTTTTCACGGAGCTCCCAATTCTAGTCCTATTCACCTGAATAGGACTCCTCTTTCTCCACCTTCAGTAATGCTACATGGTTCTCCTGTACAGTCATCCTGTGCAATGGCTGGAAGGACTAATATACCTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019592-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.361 C2=0.895
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGGCTTGGAATGTCCTCT
R:
TCATTGCTGCCCAATCTCTGC
Band lengths:
257-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]