GgaEX1035296 @ galGal3
Exon Skipping
Gene
ENSGALG00000012449 | MBD5
Description
NA
Coordinates
chr7:36293183-36299262:+
Coord C1 exon
chr7:36293183-36293285
Coord A exon
chr7:36293730-36293910
Coord C2 exon
chr7:36297124-36299262
Length
181 bp
Sequences
Splice sites
3' ss Seq
TTGGAATTTTTTTCACTCAGGTC
3' ss Score
6.17
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
TCCCAGTGGGTCTTTATTATCCTGCTTGGAGCAGGTGAAGACCTACTTGCTGACTGATGGAACCTGCAAATGTGGCCTAGAATGTCCTCTTGTTCTTCCCAAG
Seq A exon
GTCTTTAATTTTGATCCTGGAGCTGCTGTGAAGCAGAGAACTGCTGAAGATGTTAAAGCAGATGAAGATGTCACCAAACTATGCATACATAAAAGAAAGATTATTGCTGTGGCTACACTTCATAAAAGCATGGAAGCACCACATCCTTCACTAGTTCTAACTAGTCCTGGTGGTGGAACAA
Seq C2 exon
GTGCAACTCCGGTAGTTCCTACTCGAGCAGCAACTCCAAGATCAATGAGGAATAAATCACATGAAGGAATTACAAATTCTGTGATGCCAGAATGTAAGACTCCTTTCAAGTTGATGATAGGGGCATCTAATGCCATGGGTAGGCTTTATGTGCAAGAAATGGCTGGAAGCCAGCAACAAGAACTTCATTCTGTCTATCCTAGGCAGAGATTGGGTAGTAATGAACTTGGACAGAAGTCTCCATATCGTGGCAGTCATGGTGGGATGCCCAGTCCAGCTTCATCAGGATCACAGATATATGGAGACGGCTCAATCTCTCCTAGGACTGACCCACTTGGAAGCCCTGATGTTTTCACAAGGAACAATCCCAGTTTTCATGGAGCACCCAACTCAAGTCCTATTCATATGAACAGGACACCTCTGTCTCCGCCATCAGTAATGCTACATGGTTCTCCCATACAGTCATCCTGTGCAATGGCTGGAAGGACTAATATACCTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012449-'3-5,'3-3,4-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.306 C2=0.909
Domain overlap (PFAM):
C1:
PF0142914=MBD=FE(50.0=100)
A:
PF0142914=MBD=PD(16.2=18.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGACTGATGGAACCTGC
R:
AAGTTCTTGTTGCTGGCTTCCA
Band lengths:
242-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]