MmuINT0014910 @ mm9
Intron Retention
Gene
ENSMUSG00000026965 | Anapc2
Description
anaphase promoting complex subunit 2 [Source:MGI Symbol;Acc:MGI:2139135]
Coordinates
chr2:25128435-25129452:+
Coord C1 exon
chr2:25128435-25129057
Coord A exon
chr2:25129058-25129319
Coord C2 exon
chr2:25129320-25129452
Length
262 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
TGAGCGGGGATCTTTTCTAGGCA
3' ss Score
4.55
Exon sequences
Seq C1 exon
GCGTCTTCCCGGACCAGCGGTGCAGTCCCACCAAAGGAGGAAGAGCTTCGTGCAGCGGTGGAGGTTCTGAGGGGACACGGTCTGCACTCTGTCCTGGAGGAGTGGTTCGTGGAAGTGCTGCAGAACGACCTTCAAGGCAATATTGCCACGGAGTTCTGGAATGCCATCGCTCTGCGAGAAAACTCTGTCGATGAGCCCCAGTGCCTTGGGCTGCTCCTGGATGCGTTCGGTCTGCTGGAAAGCCGCTTGGATCCCTATCTGCATAGCCTAGAACTCCTAGAGAAATGGACTCGTCTGGGCTTGCTGATGGGCGCTGGAGCTCAGGGGCTTCGGGAGAAAGTTCACACTATGTTGCGGGGAGTCCTGTTTTTTTCCACCCCTAGGACATTCCAGGAGATGGTCCAGCGCCTCTATGGTCGTTTCTTGAGAGTCTATATGCAGAGCAAGAGAAAAGGAGAAGGGGGCACAGACCCGGAACTAGAGGGTGAGCTAGATAGCCGGTATGCCCGCCGCAGGTACTACCGACTTTTGCAGAGTCCTCTGTGCGCAGGATGTGGCAGTGACAAGCAGCAGTGCTGGTGCCGGCAGGCACTGGAGCAGTTCAACCAGCTGAGCCAGGTCCT
Seq A exon
GTGAGTACTGCTTCCTAACCATGCTGCGGTTTCTCTGCAAGCTTCATTAGTCCTGAATTCAAAAGACCTCTCAATAGAGCTTATAGACTAACTGGCGATGTCTTTTTTGCCCATACTTGTAACCAGGGATTATTGTTCATCACGTTTATACTGTCCTGGACATAGGCATAGGGTGTGTGTGCAGTATCTTTATGGGGAGAGCCCTCCTAGGTAAGGGACAGATGTGTGTTGTGGGTTCTCCATGAGCGGGGATCTTTTCTAG
Seq C2 exon
GCATAGGCTCAGTCTGCTGGAGCGGGTTTGTGCTGAGGCCGTGACAACCACCCTGCATCAGGTGACCCGGGAAAGGATGGAAGACCGCTGCCGAGGAGAGTATGAGCGCTCTTTTTTGCGTGAGTTTCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026965-Anapc2:NM_175300:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCCTCTATGGTCGTTTCTT
R:
TCTTCCATCCTTTCCCGGGTC
Band lengths:
303-565
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: