HsaINT0007886 @ hg19
Intron Retention
Gene
ENSG00000176248 | ANAPC2
Description
anaphase promoting complex subunit 2 [Source:HGNC Symbol;Acc:19989]
Coordinates
chr9:140080676-140082555:-
Coord C1 exon
chr9:140081933-140082555
Coord A exon
chr9:140080809-140081932
Coord C2 exon
chr9:140080676-140080808
Length
1124 bp
Sequences
Splice sites
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
3' ss Seq
TGGCCAGGGCTCTCCTCTAGACA
3' ss Score
3.13
Exon sequences
Seq C1 exon
GTGTCTTCCCGGACCAGCGGTGCAGTCCCGCCAAAGGAAGAGGAGCTCCGGGCGGCGGTGGAGGTTCTGAGGGGCCACGGGCTACACTCGGTCCTGGAGGAGTGGTTCGTGGAGGTGCTGCAGAACGATCTGCAGGCCAACATCTCCCCTGAGTTCTGGAATGCCATCTCCCAATGCGAGAACTCTGCGGATGAGCCCCAGTGCCTTTTGCTACTCCTTGACGCTTTTGGCCTGCTGGAGAGCCGCCTGGATCCCTACCTGCGTAGCCTAGAGCTGCTGGAGAAATGGACTCGCCTGGGCTTGCTGATGGGCACTGGTGCTCAGGGGCTGCGAGAAGAAGTCCACACTATGTTGCGCGGAGTCTTGTTCTTTAGCACCCCCAGAACCTTCCAAGAGATGATCCAGCGTCTGTATGGGTGCTTCTTGAGAGTCTATATGCAGAGTAAGAGGAAGGGGGAAGGGGGCACAGACCCGGAACTGGAAGGGGAGCTGGACAGCCGGTATGCCCGTCGCCGGTACTACCGGCTCCTGCAGAGCCCGCTGTGTGCAGGGTGCAGCAGTGACAAGCAACAGTGCTGGTGTCGCCAGGCTCTGGAGCAGTTCCATCAGCTCAGCCAGGTCTT
Seq A exon
GTGAGTAGTCTGTCCCGATGGCCATGCCCTTGCTCCTTCTGGTTCCCCGCTGCTCCCCTGGGTCCAGCTGGCCTCAGCAGAAAGCTGGTGAGCCGTCCTGATAACCAGGAACATGACAGAGAGAGAGTCCCAGGGATTCCTGTGCAGCGTGTCCTGGACACAGGTGTCTCTCTTCTGTCACTCACCTTCAGTCCCACAGATTCATGCCTTGACCCTGGTAAGGCCCTATGTGGCTTGTGTCTGCAGCAGCAAATTTCTTAGCAACTCCAAACTTCCTGGACTCTGCAGAATTCCACTGTGCCTTTTGTCGATCCTGGGGAGGAATGATTCTCACCCTCGTCGACATTCCTTGCCCTGTAATTGTGAACAGAAGCTTGCTGCTGCTTCTCTCCAGGAAGATCAGGTCACTGTGAGGGCAAGCAGTCTCTTGTTAGTTTGGAGAGGAGAGGGGTTTGTTGTGAGAGACAGGTCCTGTTGTAGTTCTCTAGCAATTGTCATACCCTTGGCCATTTGTGGTGGTTTTGTCACATTGAACGGGGGTGTAGCCATGCAGCTACTTGAGAGGTCTTAGGTGGACTAAAGGTGGACTAAAGGAGTGCTCCTTTTGCTGGCAGGGGTCAGGGAGACCGTGAAGGGCTTCTGTTGGGCTCATCCCTGCAAAAGTTACACGGCAACTTTTCTCATCCTCCTCTTGAGTCCTTTTGTCACTGTAGACCAGAGACTGCACTGAAAGGCACAAACAGTGGCATCTGTACCTCTGCGGCCAGGGTAGCAGTGCAGTTGGTTGTCGTTTCAGAGTTGATCCTAGGAGATAAGGCTAGGGCCCCCGACAGCCACACCTGCTGCCACTGATCACATGGGGAAGGCCAGTGTCCCTACCTGGATAGAGGCCAGCTGGGCGGGGACAGCAGAGCCTGGGAGTGCTCTGTGCTCCCAGTGGCTTCTTGAAGCCTTTGGTACAACCGCCCCCCACAGCTGAGGATTGTGGGGAGGTGTGTGCTGGGTGTGTGTGTGTGTGTGTGCTGCATGCACTCTACAGGCAGGGCAGTCCTGGCATGGGGCTGTTCTGGGCTAGAGGGGCCGGTGTGTGCTCTGGGTGCCCCATGGCCAGGGCTCTCCTCTAG
Seq C2 exon
ACACAGGCTCAGTCTGCTGGAGCGGGTCAGTGCCGAGGCTGTGACCACCACCCTGCACCAGGTGACCCGGGAGAGGATGGAGGACCGTTGCCGGGGCGAGTACGAGCGCTCCTTCCTGCGTGAGTTCCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176248-ANAPC2:NM_013366:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCCAGCGTCTGTATGGGT
R:
GAACTCACGCAGGAAGGAGC
Band lengths:
353-1477
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)