RnoINT0017209 @ rn6
Intron Retention
Gene
ENSRNOG00000011295 | Anapc2
Description
anaphase promoting complex subunit 2 [Source:RGD Symbol;Acc:1305546]
Coordinates
chr3:2490938-2491929:+
Coord C1 exon
chr3:2490938-2491560
Coord A exon
chr3:2491561-2491796
Coord C2 exon
chr3:2491797-2491929
Length
236 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
TAAGCGGGGATCTCCTCCAGGCA
3' ss Score
3.28
Exon sequences
Seq C1 exon
GCATCTTCCCGGACCAGCGGTGCAGTTCCACCAAAGGAGGAAGAGCTTCGTGCAGCGGTAGAAGTTCTGAGGGCCCACGGTCTGCACTCTGTCCTGGAGGAGTGGTTCGTGGAAGTGCTGCAGAATGACCTTCAAGGCAACATTGCCACGGAGTTCTGGAATGCCATCTCCCTTCGCGAAAACTCTGTCGATGAACCCCAATGCCTTGTGCTGCTCCTGGATGCGTTCGGTCTGCTGGAAAGCCGCTTGGATCCCTATCTGCATAGCCTAGAACTCCTAGAGAAATGGACTCGTCTGGGCTTGCTGATGGGCGCTGGAGCTCAGGGTCTTCGGGAGAAAGTTCACACTATGTTGCGGGGAGTCCTGTTTTTTTCCACCCCTAGGACATTCCAGGAGATGGTCCAGCGCCTCTATGGTCGTTTCCTGAGAGTCTATATGCAGAGCAAGAGAAAAGGAGAAGGGGGCACAGATCCAGAACTAGAGGGAGAGCTGGACAGCCGGTATGCCCGCCGCAGGTACTACCGACTTTTGCAGAGCCCTCTGTGTGCAGGATGTGGCAGTGACAAGCAGCAGTGCTGGTGCCGGCAGGCCCTGGAGCAGTTCAACCAGCTCAGCCAGGTCCT
Seq A exon
GTAAGTACTGCTTCCTGGCCATGCCTCAGTTTCTTTAAAAAGATCTCTGAATAGAGCTAATAAACTGGATGGCGAGGTCTTTTTCGCCTATACTTGTGACCAGGGATTATTGTGTATCAAGTGTATGCTGTCCTGGACATAGGCCTAGGGTGTGTGTACAGTGTCTTTCTGGGAAGACCCCTTCGGGTAAAGGACACATGTGTTGTGGGTTCTCCATAAGCGGGGATCTCCTCCAG
Seq C2 exon
GCATAGGCTCAGTCTGCTGGAGCGGGTTAGCGCTGAGGCCGTGACCACCACCCTGCATCAGGTGACCCGGGAAAGGATGGAAGACCGCTGCCGAGGAGAGTATGAGCGCTCTTTCTTGCGTGAGTTCCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011295:ENSRNOT00000015099:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTCTATGGTCGTTTCCTG
R:
CAGCGGTCTTCCATCCTTTCC
Band lengths:
308-544
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]