BtaINT0009017 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3N1P6]
Coordinates
chr11:105910832-105912777:-
Coord C1 exon
chr11:105912155-105912777
Coord A exon
chr11:105910965-105912154
Coord C2 exon
chr11:105910832-105910964
Length
1190 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
CGGGCAGGCCTCTCCTCCAGGCA
3' ss Score
4.83
Exon sequences
Seq C1 exon
GCGTCCTCTCGGACCAGCGGTGCCGTCCCTCCAAAAGAGGAGGAGCTCCGGGCGGCGGTGGAAGTGCTCAGGGGCCACGGTCTGCACTCGGTCCTGGAGGAGTGGTTCGTAGAGGTGCTGCAGACCGACCTGCAGGCCAACATCTCCCTCGAGTTCTGGAATGCCATCTCTCAGCGCGAGAACTGTGCGGACGAACCCCAGTGCCTTCTGTTGCTCCTCGATGCTTTCGGTCTGCTGGAGAGTCGCCTGGATCCCTACCTGCGTAGTCTAGAGCTCCTGGAGAAATGGACTCGCCTGGGCTTGCTGATGGGCACCGGTGCTCAGGGGCTTCGGGAGAAGGTCCACACCACGTTGCGAGGCGTCCTGTTCTTTTCGACTCCCAGAGCTTTTCAGGAGATGATCCAGCGCCTCTATGGGCGCTTCTTGAGAGTTTACATGCAGAGTAAGAGAAAGGGGGAAGGAGGCACAGACCCGGAACTGGAGGGGGAGTTGGACAGCAGGTATGCCCGCCGCCGGTACTACCGCCTTCTGCAGAGCCCGCTGTGCGCGGGCTGCGGCAGTGACAAGCAGCGGTGCTGGTGCCGCCAGGCGCTGGAGCAGTTCCACCGGCTCAGCCAGGTCCT
Seq A exon
GTGAGTACTGCGCCTGCGCGCCCTGCGTCCCTGTCCCTCCCGGCTCCTGCTCGCCCCTCTGGGTCCAGCCCGCCCCTGCAGAGAGCTGGATGGCTGGCCGGGGGTGGTCTCTGCCACTTGCCCTGGTTCCCAAGGGTTCTCAGGGTGTGTGTGCTCTATGAGTTTATGCTTCTTGTCCTTGCCATGGGTGCATTTGTCATTCATCCTGGCTCAGAACTTTGTACTTTGCTTACACTGAGACTACATGATTCTAAGTTTCACAGCAGAATTCTGTTGTGCCTATTGTAAGCTCTCAGAAGTGGAATGACGTTTGTCTGGGAATTGAGAAAAGTACAGTTGCTATTTCTTCTCTGTAGAGCAAGTCAGAGATTAGACCAGCATGCTGGGCAAAGCGCTGGCCTTTCTAGCCTTGTGAGGAGGGAAGGATTCTGTCGTCCGACCCAGGTCGTGTCATAGGGGTCCCTGACTTCCTGTGGATGCTTACTTCTATAAAATACCTACTTTCCCATTATTTACTTGGCTGTGTTGGGTCTTGGCTGTGGCACGTGGGCTCTCTTGCTGTGCTGCACGGGCTTCTCTCTGGTTGTGGCCTGTGGGCTCAGAAGCTGTGGCGTGGGGCTTAGTTGCCCCATGACATATGGGATCTTAGTTCCCCAACCAGGAATTGAACCTGTATCCTCTGCATTGGGAGGATTCTTAACCCCTGGGCCACTCGGGACGTCCCGTGGCCCCTTATGATGGTTTTGTCAGTTTGAGTGACGTGGCAGCTGCACAGCTGTCAGAGTCTTCTCACGGGACTGAGGGTGTGGCGTGTTCCACAGAAGCTTTGTTCTCTTGGGGTTTCTGCCATCACGGGTCAGGATCAGCACTGAGAAGCAGAGACTGCTACATCTGTGGTAAACAGATGTACGTAATAAAAGTGTACGTGGCCGGAGCAGTGACGTCTTTAGCTATTGTTTGAGGGCCGTTGTTAGGAGGTGGACGAGGCCTTCGCCCCAGTAGCCAGAGACGCTGACCCCTTGGGGAGAGCGGGAGGTGCCTTACCGGTGCTCTGTCATCTCAGCGGCTTTGCCTTGAATTCCCCGATGCGGTTTTGCCCCAGCGGGAGGGCTGCAGGAGGCTGTGCTGAGGGTGTGGGGCGGGTGCGCGTGCCGTGTGCCGTGTGCCACACGGGCAGGCCTCTCCTCCAG
Seq C2 exon
GCACAGGCTCAGTCTGCTGGAGCGGGTCAGCGCCGAGGCTGTGACCAGCACCCTGCACCAGGTGACCCGGGAGCGGATGGAGGACCGTTGTCGGGGGGAGTACGAACGCTCCTTCCTGCGAGAGTTCCATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046223:ENSBTAT00000064659:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTATGGGCGCTTCTTGAG
R:
ATGGAACTCTCGCAGGAAGGA
Band lengths:
346-1536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development