DreINT0029543 @ danRer10
Intron Retention
Gene
ENSDARG00000105035 | anapc2
Description
anaphase promoting complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-081104-256]
Coordinates
chr5:53911973-53913775:+
Coord C1 exon
chr5:53911973-53912297
Coord A exon
chr5:53912298-53913642
Coord C2 exon
chr5:53913643-53913775
Length
1345 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
TTTATGTTTGGTGATTTCAGGTC
3' ss Score
7.16
Exon sequences
Seq C1 exon
GTGGTCTTGAGAAACTGGGCTCATGGCAGGAGGAGAGCTGTGGGGATTTGTGTGGTCCAGGGCCCCATGGTCTGATTGAGAGAGCTTTTTCTGTCATTCGTGCCATTCTCCTGTTCTCGCCTCCACCTGTCCTGCAGGAACGCATGTTGGAGTTTTATAGCCGAACATTCTCAGTGCACATGAGTCAGGCAGGGGAAGCTGTGGAGGCTGAGGAGGGAGCCGTTGATACTGATGAAGGTGGTTTGTGCTCGGGCTGTGCCACCCTCCCTCACCTGTGCTGGTGTCAGGAAGCTCTACAGCAGCTTCAAGAGCTCAGCCACATACT
Seq A exon
GTGAGTTAAAGTCAAGTGCCATTGTGATGAATAATAACACTGCAAATGCAGCTGCTCCACTGTTGTTTGGTTACTATTTGCATACTATTGCTGTTTGTAGTGTCAGTTGGCTAATATGTTTAAATTGAACTGTGGCTATGAACTGTTGTGTAAAATCAGAGTCACGTTTGCAGTCTCCACTCATATTTAGCAAAAGCACAGCTGTTGCTTTGTGATGTTTCATAATAATATAATTTACTATATACCTGTATCTTGAAGGTATAGAAAATGTCCCTACCATTTACACACATTCAAGTTATTTTAAACTTTAGGGGAATTTATTTCTTATTTTTTCTTTTATTTTTTGAACACAATAATAAGATATCCTGAAGAACGTTGGAAAAAAGCGTTTATTGACATCCATAGGAACTTAAAGTACTATGGAAGTCAATGGCTGTTTTTTCCATCATCCTTTACTAGTACCATTTTTTGTGTTATACAGACTTAAGAAAGTCAAACAGGTTTGAGACAAGTGGCAGATGAGTAAATGCAGCATTAAAATATTTGGGCAAACTACCATTTTTTGCCCCATGTTTTTAATTTTGGGGTTATTCCTACAGCATTCTAATAATTAGAATCATAAAAAAAGCATTCACTTTCAAGGATTGTTTTATACTATTATATGGCATATTTGCACATTACTGAAACAACCATTATTATATTATTATCATAAAATGTGGTTAAAAATAGTACTTTGGTTGTCTTACATTCCAATTGTCCCATTTGCTTCTTTTAATACAGCACTGACATACAGTTAAATTCAGAATTATTAGCCCCCCTTTAATTAATTTAATTTTTAAAAAGTTTTCCCAAATGATGTTTAACAGAGGTAGGAAATTTTCACAATATCTCTGTGTATTTTTTTCTGAATAAATTCTTATTTAATTTATTTCGGCTGGAATAAAAGCAGTTTTTACATTTTTAAAAAACATTTTAAGGTCAAAATTATTAGCCCCTTTAATCTATGTTTTCCGATAGTCTATAGAACAAGCCATCGTTATGCAATAACTTGCCTAATTACCCTAACCTTCCTAGTTAACCTAATTAACCTAGTTAAGCCTTTAAATGTCACTTTAAGCTGTGTAGAAGTGTCTTGAAAAATATCTAGTAAAATATTATTTAGTTTTATCATGGCAAAGATAAAATAAATCAATTATAAGAAATTAGTTATTAAAACAATTATGTTTATAAATTTTTTGAAAAAAAAATTCTCACCGAAAAAATAATCAGGGGGCTAATAATTCAGGGGGGCTAATAATTCTGACTTTTACTATAAATTTTGAAGTTTTATGTTTGGTGATTTCAG
Seq C2 exon
GTCCAGACTACAGCTGTTGGAACGCGTGAGCTCAGAGGCTGTGACCAGCATCTTGCACCAGCTAATAGAGCAGAGAATGGAGCAGCGCTATAGAGGAGAATATGAACGCTCTTTTCTTACTGACTTCAATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000105035:ENSDART00000171159:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.046 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0088817=Cullin=PU(11.0=56.9)
A:
NA
C2:
PF0088817=Cullin=FE(7.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGGATTTGTGTGGTCCAG
R:
TTAGCTGGTGCAAGATGCTGG
Band lengths:
351-1696
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]