MmuINT0175248 @ mm9
Intron Retention
Gene
ENSMUSG00000035295 | Wdr38
Description
WD repeat domain 38 [Source:MGI Symbol;Acc:MGI:1923896]
Coordinates
chr2:38856352-38856729:+
Coord C1 exon
chr2:38856352-38856501
Coord A exon
chr2:38856502-38856681
Coord C2 exon
chr2:38856682-38856729
Length
180 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGC
5' ss Score
9.89
3' ss Seq
TTGCCTGTTTTTACTTCTAGGTC
3' ss Score
11.76
Exon sequences
Seq C1 exon
GCATCTGGCTCTTGGGACAAGACCATCTGTGTCTGGAAGCCTACAACCAACAACCTGCCTCTTCAGCTCAAGGGCCATACCATTTGGGTGAATAGTCTAGCCTTTTCTCCTGATGAACTGAAGTTAGCCAGTGCTGGTTACTCTCGTACG
Seq A exon
GTAAGCCCAGATAAACCTCCGCCTCACCTTTCCAGAGGTTCCAGCCATACCAGAAATGCCCATGAATAACACAGGCAAGGACAAGACCCAGATACTGATCTCTAGTGACCTTGTCCGCAGACATATCTGGGTCTGAGACCACTGATACCTCCCAACTCTATTGCCTGTTTTTACTTCTAG
Seq C2 exon
GTCAAAGTCTGGGACTGCCTCACAGGGAAATGCCTTGAGACCCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035295-Wdr38:NM_029687:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(32.4=24.0),PF0040027=WD40=PU(84.2=64.0)
A:
NA
C2:
PF0040027=WD40=PD(10.5=25.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTGGCTCTTGGGACAA
R:
AGGGTCTCAAGGCATTTCCCT
Band lengths:
194-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: