HsaINT0182097 @ hg19
Intron Retention
Gene
ENSG00000136918 | WDR38
Description
WD repeat domain 38 [Source:HGNC Symbol;Acc:23745]
Coordinates
chr9:127619011-127619690:+
Coord C1 exon
chr9:127619011-127619160
Coord A exon
chr9:127619161-127619642
Coord C2 exon
chr9:127619643-127619690
Length
482 bp
Sequences
Splice sites
5' ss Seq
ATGGTAACC
5' ss Score
5.31
3' ss Seq
ATGCCCCCCTCCTTTTCCAGGTC
3' ss Score
13.16
Exon sequences
Seq C1 exon
GCATCCGGCTCCTGGGACAAGACCATCCACATCTGGAAGCCCACAACCAGCAGCCTGCTTATCCAACTGAAGGGCCATGTCACCTGGGTGAAGAGCATAGCCTTCTCTCCCGACGAGCTGTGGCTGGCCAGCGCCGGCTATTCCCGCATG
Seq A exon
GTAACCACCCCGGGCCCATCCTGCTCCTACCTACCCATCCTCACCCCACCAGGAGCCCTCAGCACTCACTCCAGAAATGCCCACATCCCCACTTGCCCTAGCTAGGAGGGGGCAAGGGCAGGACCTGGGTGCCAGCCTCTCTTCCTAATGGCCAGCACCAAGGTTAGGGCTGGCCCATTGGTAGTTGCATTGACATTTCCATGACCCAAATGGCATCAGGCAAAAGGGAACTCCTGCTCTGAAATTTCAAATACAGCCTCCAAACAAAACCTACACCAAGAGGTTCAGATGTTTTTTGGGCCGGGGGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGTGGAGGTAGGTGAATCACCTGAGGTCAGGAGTTCAGGCGAAGACTCATCTCATATTTTGTCTGGGACTTTCCTGGAGGTGGCTTCAGATGCCACAGTGGCCTGGTGAGGCTTCCTGACATGCCCCCCTCCTTTTCCAG
Seq C2 exon
GTCAAAGTCTGGGACTGCAACACAGGAAAGTGCCTTGAGACCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136918-WDR38:NM_001045476:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(32.4=24.0),PF0040027=WD40=PU(84.6=66.0)
A:
NA
C2:
PF0040027=WD40=PD(10.3=25.0),PF0040027=WD40=PU(19.4=43.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCCGGCTCCTGGGAC
R:
CTTCAGGGTCTCAAGGCAC
Band lengths:
198-680
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)