HsaINT0182097 @ hg38
Intron Retention
Gene
ENSG00000136918 | WDR38
Description
WD repeat domain 38 [Source:HGNC Symbol;Acc:HGNC:23745]
Coordinates
chr9:124856732-124857411:+
Coord C1 exon
chr9:124856732-124856881
Coord A exon
chr9:124856882-124857363
Coord C2 exon
chr9:124857364-124857411
Length
482 bp
Sequences
Splice sites
5' ss Seq
ATGGTAACC
5' ss Score
5.31
3' ss Seq
ATGCCCCCCTCCTTTTCCAGGTC
3' ss Score
13.16
Exon sequences
Seq C1 exon
GCATCCGGCTCCTGGGACAAGACCATCCACATCTGGAAGCCCACAACCAGCAGCCTGCTTATCCAACTGAAGGGCCATGTCACCTGGGTGAAGAGCATAGCCTTCTCTCCCGACGAGCTGTGGCTGGCCAGCGCCGGCTATTCCCGCATG
Seq A exon
GTAACCACCCCGGGCCCATCCTGCTCCTACCTACCCATCCTCACCCCACCAGGAGCCCTCAGCACTCACTCCAGAAATGCCCACATCCCCACTTGCCCTAGCTAGGAGGGGGCAAGGGCAGGACCTGGGTGCCAGCCTCTCTTCCTAATGGCCAGCACCAAGGTTAGGGCTGGCCCATTGGTAGTTGCATTGACATTTCCATGACCCAAATGGCATCAGGCAAAAGGGAACTCCTGCTCTGAAATTTCAAATACAGCCTCCAAACAAAACCTACACCAAGAGGTTCAGATGTTTTTTGGGCCGGGGGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGTGGAGGTAGGTGAATCACCTGAGGTCAGGAGTTCAGGCGAAGACTCATCTCATATTTTGTCTGGGACTTTCCTGGAGGTGGCTTCAGATGCCACAGTGGCCTGGTGAGGCTTCCTGACATGCCCCCCTCCTTTTCCAG
Seq C2 exon
GTCAAAGTCTGGGACTGCAACACAGGAAAGTGCCTTGAGACCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136918:ENST00000373574:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(32.4=24.0),PF0040027=WD40=PU(84.6=66.0)
A:
NA
C2:
PF0040027=WD40=PD(10.3=25.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCCGGCTCCTGGGAC
R:
CTTCAGGGTCTCAAGGCAC
Band lengths:
198-680
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains