MmuEX0044097 @ mm9
Exon Skipping
Gene
ENSMUSG00000036281 | Snapc4
Description
small nuclear RNA activating complex, polypeptide 4 [Source:MGI Symbol;Acc:MGI:2443935]
Coordinates
chr2:26233541-26234156:-
Coord C1 exon
chr2:26234014-26234156
Coord A exon
chr2:26233681-26233799
Coord C2 exon
chr2:26233541-26233587
Length
119 bp
Sequences
Splice sites
3' ss Seq
CCACCCCTGCTGCCATCTAGCCT
3' ss Score
4.17
5' ss Seq
CCAGTGAGA
5' ss Score
3.73
Exon sequences
Seq C1 exon
GCAGGCTGAAGCCATGGACATAGACGCCGAACGAGAGAAAATAACACAGGAGATCCAGGAGCTTGAAAGGATTTTGTATCCTGGATCCACCAGCGTCCACTTTGAAGTCTCTGAATCCAGTCTCAGTTCAGACTCTGAAGCAG
Seq A exon
CCTGGGACCCTCTAAGCAATGGTGAATCCTGGTGGGGAGAAGAGGACCCAGAGCTCAGCCTATCAACTTGAATAGTCTCCATGGCCCAGATACACAGAATTTCGTCCCTGAGCACTCCA
Seq C2 exon
ATTCGCTGCCTGATGAGGACTTGGAAACTGCTGGTGCCCCCATCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036281_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.735 A=0.696 C2=1.000
Domain overlap (PFAM):
C1:
PF0364610=FlaG=PD(93.5=87.8)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCCATGGACATAGACGCC
R:
CACCAGCAGTTTCCAAGTCCT
Band lengths:
172-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: