Special

ENSMUSG00000036281 @ mm9

Biotype
protein_coding
Gene Symbol
Snapc4
Description
small nuclear RNA activating complex, polypeptide 4 [Source:MGI Symbol;Acc:MGI:2443935]
Coordinates
chr2:26218285-26236173:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
-
68.54
82.68
0
Alternative 3'ss
24
chr2:26219289-26219312
-
31.46
82.68
0
Alternative 5'ss
0
NA
-
29.25
63.8
0
Alternative 5'ss
28
chr2:26228251-26228278
-
70.75
63.8
0
Exon Skipping
79
chr2:26231675-26231753
-
96.86
28.28
0
Exon Skipping
119
chr2:26233681-26233799
-
12.31
80.59
0
Intron Retention
554
chr2:26228987-26229540
-
44.92
73.42
0
Intron Retention
238
chr2:26228601-26228838
-
13.5
34.78
0
Intron Retention
148
chr2:26228346-26228493
-
11.37
38.74
0
Intron Retention
1850
chr2:26226401-26228250
-
25.79
55.4
0
Intron Retention
214
chr2:26233800-26234013
-
12.55
37.14
0
Intron Retention
754
chr2:26221957-26222710
-
13.47
38.32
0
Intron Retention
371
chr2:26221558-26221928
-
17.34
34.15
0
Intron Retention
851
chr2:26219289-26220139
-
20.55
30
0
Intron Retention
984
chr2:26232557-26233540
-
18.5
49.09
0
Intron Retention
143
chr2:26232246-26232388
-
11.81
50.7
0
Intron Retention
366
chr2:26231754-26232119
-
12.28
43.64
0
Intron Retention
465
chr2:26231210-26231674
-
16.09
44.9
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000165684 SNAPC4 1-to-1
Human hg19 ENSG00000165684 SNAPC4 1-to-1
Rat rn6 ENSRNOG00000018845 Snapc4 1-to-1
Cow bosTau6 ENSBTAG00000000054 SNAPC4 1-to-1
Chicken galGal4 ENSGALG00000001910 SNAPC4 1-to-1
Chicken galGal3 ENSGALG00000001910 SNAPC4 1-to-1
Zebrafish danRer10 ENSDARG00000067673 snapc4 1-to-1
Fruitfly dm6 FBgn0037540 Pbp95 1-to-1