Special

ENSMUSG00000036281 @ mm10

Biotype
protein_coding
Gene Symbol
Snapc4
Description
small nuclear RNA activating complex, polypeptide 4 [Source:MGI Symbol;Acc:MGI:2443935]
Coordinates
chr2:26362765-26380653:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
2
chr2:26363767-26363768
-
69.19
87.97
0
Alternative 3'ss
26
chr2:26363767-26363792
-
30.52
87.97
0
Alternative 3'ss
0
NA
-
19.53
49.16
0
Alternative 3'ss
4
chr2:26378633-26378636
-
80.46
49.16
0
Alternative 5'ss
0
NA
-
28.75
63.8
0
Alternative 5'ss
28
chr2:26372731-26372758
-
71.25
63.8
0
Exon Skipping
79
chr2:26376155-26376233
-
96.88
28.28
0
Exon Skipping
119
chr2:26378161-26378279
-
12
80.59
0
Exon Skipping
165
chr2:26374021-26374185
-
98.88
79.5
0
Intron Retention
554
chr2:26373467-26374020
-
43.43
77.46
0
Intron Retention
238
chr2:26373081-26373318
-
14.43
51.43
0
Intron Retention
148
chr2:26372826-26372973
-
12.85
50
0
Intron Retention
1850
chr2:26370881-26372730
-
26.2
65.08
0
Intron Retention
426
chr2:26378068-26378493
-
14.92
68.63
0
Intron Retention
754
chr2:26366437-26367190
-
12.93
38.32
0
Intron Retention
371
chr2:26366038-26366408
-
16.46
38.48
0
Intron Retention
851
chr2:26363769-26364619
-
18.02
36.98
0
Intron Retention
984
chr2:26377037-26378020
-
18.61
51.02
0
Intron Retention
143
chr2:26376726-26376868
-
11.23
50.7
0
Intron Retention
366
chr2:26376234-26376599
-
11.26
43.64
0
Intron Retention
465
chr2:26375690-26376154
-
15.14
44.9
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000165684 SNAPC4 1-to-1
Human hg19 ENSG00000165684 SNAPC4 1-to-1
Rat rn6 ENSRNOG00000018845 Snapc4 1-to-1
Cow bosTau6 ENSBTAG00000000054 SNAPC4 1-to-1
Chicken galGal4 ENSGALG00000001910 SNAPC4 1-to-1
Chicken galGal3 ENSGALG00000001910 SNAPC4 1-to-1
Zebrafish danRer10 ENSDARG00000067673 snapc4 1-to-1
Fruitfly dm6 FBgn0037540 Pbp95 1-to-1