MmuEX0044096 @ mm10
Exon Skipping
Gene
ENSMUSG00000036281 | Snapc4
Description
small nuclear RNA activating complex, polypeptide 4 [Source:MGI Symbol;Acc:MGI:2443935]
Coordinates
chr2:26375608-26376725:-
Coord C1 exon
chr2:26376600-26376725
Coord A exon
chr2:26376155-26376233
Coord C2 exon
chr2:26375608-26375689
Length
79 bp
Sequences
Splice sites
3' ss Seq
AACACTGTACACTCTGACAGGGG
3' ss Score
5.05
5' ss Seq
AGTGTAAGA
5' ss Score
4.57
Exon sequences
Seq C1 exon
GAAGAGATCCTGTTTGATCTGTCTGGAACCAAATGCCCCAAGGTGAAGGATGGCAGAAGTCTGCCCTCATACATGTACATAGGCCACTTCCTGAAGCCATACTTCAAGGACAAGGTTACTGGAGTG
Seq A exon
GGGCCTCCTGCCAACGAAGAAACACGGGAGAAGGCTACCCAGGGAATCAAGGCCTTTGAACAGCTCTTGGTGACCAAGT
Seq C2 exon
GGAAGCACTGGGAGAAAGCCTTGCTCAGGAAGTCTGTAGTGAGTGACCGCCTACAACGTCTGCTTCAGCCCAAATTGCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036281_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=0.444 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCAAATGCCCCAAGGTGA
R:
AGCAATTTGGGCTGAAGCAGA
Band lengths:
180-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types