HsaEX6064001 @ hg19
Exon Skipping
Gene
ENSG00000165684 | SNAPC4
Description
small nuclear RNA activating complex, polypeptide 4, 190kDa [Source:HGNC Symbol;Acc:11137]
Coordinates
chr9:139288701-139289875:-
Coord C1 exon
chr9:139289750-139289875
Coord A exon
chr9:139289252-139289330
Coord C2 exon
chr9:139288701-139288782
Length
79 bp
Sequences
Splice sites
3' ss Seq
GATGCCGTGCACCCTGACAGGGG
3' ss Score
4.56
5' ss Seq
AATGTAAGA
5' ss Score
5.55
Exon sequences
Seq C1 exon
GAGGAACTCATGAGGGATCTGGCTGGGTCCAAAGGCACCAAGGTGAAAGATGGCAAAAGCCTGCCCCCAAGCACATACATGGGGCACTTCATGAAGCCGTATTTCAAGGACAAGGTCACGGGCGTG
Seq A exon
GGGCCACCTGCCAACGAGGACACACGAGAGAAGGCTGCCCAGGGGATCAAGGCTTTCGAGGAGCTCCTTGTGACCAAAT
Seq C2 exon
GGAAAAACTGGGAAAAGGCCTTGCTCCGAAAGTCAGTGGTGAGTGACCGCCTGCAGCGATTGCTTCAGCCCAAGTTACTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165684-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.762 A=0.481 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACTCATGAGGGATCTGGC
R:
CTCACCACTGACTTTCGGAGC
Band lengths:
167-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)