DreEX6013252 @ danRer10
Exon Skipping
Gene
ENSDARG00000067673 | snapc4
Description
small nuclear RNA activating complex, polypeptide 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5794]
Coordinates
chr5:50543934-50544389:-
Coord C1 exon
chr5:50544264-50544389
Coord A exon
chr5:50544108-50544186
Coord C2 exon
chr5:50543934-50544015
Length
79 bp
Sequences
Splice sites
3' ss Seq
ATTTTGATTTGTTTTTCTAGGGT
3' ss Score
9.96
5' ss Seq
GATGTACGT
5' ss Score
6.45
Exon sequences
Seq C1 exon
AAAGAGATCGAGGTCCAGCTCTCTGGCCCAGGCAACTCTATCTTCTCAGTACCTGGAGTTCCTCCTCAGAAACAATTTCTAGGATACTTCTTAAAGCCTTACTTCAAGGACAAACTCACCGGTTTG
Seq A exon
GGTCCTCCAGCTAATGAGGAAACTAAAGAGAGGATGAAGCATGGTAGCATACCTGTTGATAATCTGAAAATTAAAAGAT
Seq C2 exon
GGGAGGGTTGGCAGAAGACTTTGCTGACCAATGCAGTTGCTAGAGACACTATGAAACGAATGCTGCAACCTAAACTATCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067673-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.290 A=0.602 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGATCGAGGTCCAGCTCT
R:
TAGCAACTGCATTGGTCAGCA
Band lengths:
167-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]