Special

ENSG00000165684 @ hg38

Biotype
protein_coding
Gene Symbol
SNAPC4
Description
small nuclear RNA activating complex polypeptide 4 [Source:HGNC Symbol;Acc:HGNC:11137]
Coordinates
chr9:136375577-136400168:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
-
81.18
34.34
0
Alternative 3'ss
4
chr9:136398438-136398441
-
18.82
34.34
0
Alternative 3'ss
0
NA
-
96.75
100
0
Alternative 3'ss
106
chr9:136392107-136392212
-
3.25
100
0
Alternative 5'ss
0
NA
-
26.19
77.26
0
Alternative 5'ss
28
chr9:136387485-136387512
-
73.81
77.26
0
Exon Skipping
155
chr9:136398953-136399107
-
1.65
33.33
0
Intron Retention
2670
chr9:136384815-136387484
-
19.22
84.62
0
Intron Retention
849
chr9:136382337-136383185
-
11.15
41.73
0
Intron Retention
1061
chr9:136376482-136377542
-
10.65
42.58
0
Intron Retention
179
chr9:136395424-136395602
-
15.44
60.85
0
Intron Retention
419
chr9:136394879-136395297
-
17.14
55.73
0
Intron Retention
1471
chr9:136392778-136394248
-
10.55
30.91
0
Intron Retention
415
chr9:136392107-136392521
-
15.33
50.97
0
Intron Retention
3350
chr9:136388592-136391941
-
10.81
47.54
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000036281 Snapc4 1-to-1
Mouse mm9 ENSMUSG00000036281 Snapc4 1-to-1
Rat rn6 ENSRNOG00000018845 Snapc4 1-to-1
Cow bosTau6 ENSBTAG00000000054 SNAPC4 1-to-1
Chicken galGal4 ENSGALG00000001910 SNAPC4 1-to-1
Chicken galGal3 ENSGALG00000001910 SNAPC4 1-to-1
Zebrafish danRer10 ENSDARG00000067673 snapc4 1-to-1
Fruitfly dm6 FBgn0037540 Pbp95 1-to-1