HsaEX1038123 @ hg38
Exon Skipping
Gene
ENSG00000165684 | SNAPC4
Description
small nuclear RNA activating complex polypeptide 4 [Source:HGNC Symbol;Acc:HGNC:11137]
Coordinates
chr9:136398299-136400168:-
Coord C1 exon
chr9:136400114-136400168
Coord A exon
chr9:136398953-136399107
Coord C2 exon
chr9:136398299-136398437
Length
155 bp
Sequences
Splice sites
3' ss Seq
TTCTCCCACTCTCTCTCTAGCGT
3' ss Score
11.1
5' ss Seq
GCTGTTAGT
5' ss Score
-5.34
Exon sequences
Seq C1 exon
AGTCGCCCGGGCGACGGCGGGGTCCGCGCGGCCAGGTAAGGTGTGCGCCCAGCAG
Seq A exon
CGTCCTTCTCCCTTCAGACTTCCTGGACCACAGTTCCTAAGAAAAAAGCTTGACAAACATTTGTTAGTGTCAGGCACTGCCACGTTCCAGGCGTTGTTCTGGATGTACAGAGAACAGCCAGCCTTCCCTTTGGGAGCTTCCTTCCCAACCATGCT
Seq C2 exon
GCGGGAGTCATGGATGTAGATGCTGAAAGAGAGAAGATAACACAGGAGATCAAGGAGCTGGAAAGGATTTTGGATCCCGGCTCCTCGGGCTCCCACGTGGAGATCTCAGAATCAAGTCTCGAGTCAGATTCTGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165684_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGTAAGGTGTGCGCC
R:
TGCTTCAGAATCTGACTCGAGAC
Band lengths:
162-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains