HsaALTA1042264-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000165684 | SNAPC4
Description
small nuclear RNA activating complex polypeptide 4 [Source:HGNC Symbol;Acc:HGNC:11137]
Coordinates
chr9:136391942-136392594:-
Coord C1 exon
chr9:136392522-136392594
Coord A exon
NA
Coord C2 exon
chr9:136391942-136392106
Length
0 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGT
5' ss Score
10.74
3' ss Seq
GAGTGTCTCTGTCGGTGCAGTTT
3' ss Score
5.44
Exon sequences
Seq C1 exon
CCAGCTTCCAGAAGAGGCCTTGCTGGGAAACAGGCTGGACAGCCACGACTGGGAGAAGATTTCCAATATTAAC
Seq A exon
NA
Seq C2 exon
TTTGAAGGCAGCCGCAGTGCAGAGGAGATCCGGAAGTTCTGGCAGAACTCGGAGCACCCCAGCATCAACAAGCAGGAGTGGAGCAGGGAGGAGGAGGAGCGGCTGCAGGCGATCGCGGCTGCACACGGCCACCTGGAGTGGCAGAAGATTGCAGAGGAGCTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165684-18-21,18-20-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=0.205
Domain overlap (PFAM):
C1:
PF139211=Myb_DNA-bind_6=FE(34.8=100)
A:
NA
C2:
PF139211=Myb_DNA-bind_6=PU(45.9=50.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCAGAAGAGGCCTTGCTG
R:
CCCCAGCTCCTCTGCAATCTT
Band lengths:
234-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains