HsaALTD1032840-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000165684 | SNAPC4
Description
small nuclear RNA activating complex polypeptide 4 [Source:HGNC Symbol;Acc:HGNC:11137]
Coordinates
chr9:136384720-136387576:-
Coord C1 exon
chr9:136387513-136387576
Coord A exon
NA
Coord C2 exon
chr9:136384720-136384814
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
GCTTTTCATGTCACGTTCAGGTA
3' ss Score
7.56
Exon sequences
Seq C1 exon
TTGCTTCAAGCTGTTGCCAAATACGGGGAGCAGGATTGGTTTAAAATCCGGGAAGAGGTGCCAG
Seq A exon
NA
Seq C2 exon
GTATCTCAGGAGATTACATTTCAGCTTGAAAAAGGGTCGGTGGAATTTAAAAGAAGAGGAACAGTTAATTGAATTAATAGAAAAATATGGTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165684-24-30,25-30-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=FE(66.0=100)
A:
NA
C2:
PF139211=Myb_DNA-bind_6=PD(36.1=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTTCAAGCTGTTGCCAAA
R:
AAATTCCACCGACCCTTTTTCA
Band lengths:
112-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains