MmuALTD0013299-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000036281 | Snapc4
Description
small nuclear RNA activating complex, polypeptide 4 [Source:MGI Symbol;Acc:MGI:2443935]
Coordinates
chr2:26226306-26228345:-
Coord C1 exon
chr2:26228279-26228345
Coord A exon
NA
Coord C2 exon
chr2:26226306-26226400
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
CTGTTTCCACACATTTCCAGCTA
3' ss Score
7.13
Exon sequences
Seq C1 exon
AAATTGCTTCAAGCTGTTGCCAAGTATGGGGCGCAGGACTGGTTTAAAATCCGGGAAGAGGTGCCAG
Seq A exon
NA
Seq C2 exon
CTACATCAGAAGATTACATTTCAGCTTGAAAAAGGGACGGTGGAATGCAAAAGAAGAACAACAGCTGATCCAGCTAATAGAGAAATATGGTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036281-20-24,21-24-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF057128=MRG=FE(18.0=100),PF116263=Rap1_C=FE(19.9=100),PF139211=Myb_DNA-bind_6=FE(52.5=100)
A:
NA
C2:
PF057128=MRG=FE(17.4=100),PF116263=Rap1_C=FE(19.3=100),PF139211=Myb_DNA-bind_6=PD(36.1=68.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTCAAGCTGTTGCCAAGT
R:
TCTTTTGCATTCCACCGTCCC
Band lengths:
117-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: