BtaEX0033910 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000054 | SNAPC4
Description
small nuclear RNA activating complex, polypeptide 4, 190kDa [Source:HGNC Symbol;Acc:HGNC:11137]
Coordinates
chr11:103902121-103903061:-
Coord C1 exon
chr11:103902936-103903061
Coord A exon
chr11:103902499-103902577
Coord C2 exon
chr11:103902121-103902202
Length
79 bp
Sequences
Splice sites
3' ss Seq
CGCCTGCCATTCTCCGACAGGGG
3' ss Score
8.39
5' ss Seq
AGTGTACGA
5' ss Score
0.96
Exon sequences
Seq C1 exon
GAGGAAGTCATGGGCGACCTTGTGGGCGTCAAGGGCCCCAAGGTGAAGGACGACAGGAACCCGCCCCCAAACCTGTACCTCGGACACTTCATGAAGCCCTACTTCAGGGACAGGGTCACGGGAGTG
Seq A exon
GGGCCTCCTGCCAACGAGGACACGCGGGAGAAGGCTGCCCAGGGCATCAAGGCTTTCACGGAGCTCCTGGTGACCAAGT
Seq C2 exon
GGAAGACCTGGGAAAAGGTCCTGCTCAGGAAGTCGGTGGTGAGTGACCGCCTGCAGCGGCTGCTCCAGCCCAAGTTGCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000054-'5-6,'5-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=0.444 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGTGAAGGACGACAGGA
R:
TTGAGCAACTTGGGCTGGAG
Band lengths:
171-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development