MmuALTA1027921-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000036281 | Snapc4
Description
small nuclear RNA activating complex, polypeptide 4 [Source:MGI Symbol;Acc:MGI:2443935]
Coordinates
chr2:26378494-26380649:-
Coord C1 exon
chr2:26380549-26380649
Coord A exon
chr2:26378633-26378636
Coord C2 exon
chr2:26378494-26378632
Length
4 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TGTTTTCTAACATTCTGAAGGCA
3' ss Score
5.13
Exon sequences
Seq C1 exon
GGTGCAAGCCTACTGACTTCCGCGACTGCTAGAAGCATGATCTGCGTGTGGTCGCCCGGGCGATGATGCCAGCTGTGAAGTTTGGAAGGGATGCCTAGAAG
Seq A exon
GCAG
Seq C2 exon
GCTGAAGCCATGGACATAGACGCCGAACGAGAGAAAATAACACAGGAGATCCAGGAGCTTGAAAGGATTTTGTATCCTGGATCCACCAGCGTCCACTTTGAAGTCTCTGAATCCAGTCTCAGTTCAGACTCTGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036281-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.742
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGATGCCAGCTGTGAAGT
R:
AGCTCCTGGATCTCCTGTGTT
Band lengths:
100-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types