MmuEX6099708 @ mm10
Exon Skipping
Gene
ENSMUSG00000036281 | Snapc4
Description
small nuclear RNA activating complex, polypeptide 4 [Source:MGI Symbol;Acc:MGI:2443935]
Coordinates
chr2:26373319-26374564:-
Coord C1 exon
chr2:26374492-26374564
Coord A exon
chr2:26374021-26374185
Coord C2 exon
chr2:26373319-26373466
Length
165 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTCTCATGGGTGTAGTTT
3' ss Score
5.85
5' ss Seq
GGGGTAAAG
5' ss Score
3.53
Exon sequences
Seq C1 exon
CCAGCTCCCAGAGGAAGCATTGTTGGGGAACCGGCTAGACAGCCACGACTGGGAGAAGATTTCCAATATTAAC
Seq A exon
TTTGAAGGAGCCCGCAGTGCAGAGGAGATCCGGAAGTTCTGGCAGAGTTCTGAGCATCCAAGCATCAGTAAGCAGGAATGGAGCACAGAAGAAGTAGAGAGGCTGAAGGCCATCGCTGCCACACATGGCCACCTGGAGTGGCACTTGGTTGCAGAGGAACTTGGG
Seq C2 exon
ACAAGCCGCAGTGCCTTTCAGTGCCTGCAGAAATTCCAGCAGTACAACAAAACCCTGAAACGCAAGGAGTGGACAGAAGAGGAAGACCACATGCTCACCCAGCTGGTCCAAGAGATGCGAGTTGGGAACCATATCCCATACCGCAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036281_MULTIEX2-1/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.045 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0024926=Myb_DNA-binding=PU(93.9=56.4)
C2:
PF0024926=Myb_DNA-binding=PU(56.0=65.1)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTCCCAGAGGAAGCATTG
R:
TTGCGGTATGGGATATGGTTCC
Band lengths:
218-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types