MmuEX6099708 @ mm9
Exon Skipping
Gene
ENSMUSG00000036281 | Snapc4
Description
small nuclear RNA activating complex, polypeptide 4 [Source:MGI Symbol;Acc:MGI:2443935]
Coordinates
chr2:26228839-26230084:-
Coord C1 exon
chr2:26230012-26230084
Coord A exon
chr2:26229541-26229705
Coord C2 exon
chr2:26228839-26228986
Length
165 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTCTCATGGGTGTAGTTT
3' ss Score
5.85
5' ss Seq
GGGGTAAAG
5' ss Score
3.53
Exon sequences
Seq C1 exon
CCAGCTCCCAGAGGAAGCATTGTTGGGGAACCGGCTAGACAGCCACGACTGGGAGAAGATTTCCAATATTAAC
Seq A exon
TTTGAAGGAGCCCGCAGTGCAGAGGAGATCCGGAAGTTCTGGCAGAGTTCTGAGCATCCAAGCATCAGTAAGCAGGAATGGAGCACAGAAGAAGTAGAGAGGCTGAAGGCCATCGCTGCCACACATGGCCACCTGGAGTGGCACTTGGTTGCAGAGGAACTTGGG
Seq C2 exon
ACAAGCCGCAGTGCCTTTCAGTGCCTGCAGAAATTCCAGCAGTACAACAAAACCCTGAAACGCAAGGAGTGGACAGAAGAGGAAGACCACATGCTCACCCAGCTGGTCCAAGAGATGCGAGTTGGGAACCATATCCCATACCGCAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036281-'14-17,'14-13,15-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.036 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF139211=Myb_DNA-bind_6=PU(45.9=50.9)
C2:
PF057128=MRG=FE(23.6=100),PF0024926=Myb_DNA-binding=PU(56.0=65.1),PF116263=Rap1_C=FE(26.1=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTCCCAGAGGAAGCATTG
R:
TTGCGGTATGGGATATGGTTCC
Band lengths:
218-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: