BtaEX6047164 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000054 | SNAPC4
Description
small nuclear RNA activating complex, polypeptide 4, 190kDa [Source:HGNC Symbol;Acc:HGNC:11137]
Coordinates
chr11:103897612-103901249:-
Coord C1 exon
chr11:103901177-103901249
Coord A exon
chr11:103900797-103900961
Coord C2 exon
chr11:103897612-103897759
Length
165 bp
Sequences
Splice sites
3' ss Seq
GTCTGTTTGTCTGTCTGCAGTTT
3' ss Score
9.31
5' ss Seq
GGGGTGAGG
5' ss Score
5.5
Exon sequences
Seq C1 exon
TCAGCTCCCGGAGGAGGCCTTGCTGGGCGACAGGCTGGACAGCCACGACTGGGACAAGATCTCCAACGTCAAC
Seq A exon
TTTGAGGGAGGCCGCAGCACGGAGGAGATCCGCAAGTTCTGGCAGAACCACGAGCACCCGAGCATCAACAAGCAGGAGTGGAGCGAACAGGAGGTGGCCCAGCTGAAGGCCGTCGCAGCCAAGCACGGCCACCTGGACTGGCAGAGTATCGCCGAGGAGCTGGGG
Seq C2 exon
ACGCACCGCAGCGCCTTCCAGTGCTTGCAGAGGTACCAGCAGCACAACCCGGCCCTGAAGCGCAGGGAGTGGACGGAGGAGGAGGACCGCATGCTCACGCGGCTCGTGCAGGCCATGCGAGTCGGCAGCCACATCCCCTACCGGAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000054-'11-14,'11-11,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=0.200 C2=0.080
Domain overlap (PFAM):
C1:
NO
A:
PF139211=Myb_DNA-bind_6=PU(45.9=50.9)
C2:
PF139211=Myb_DNA-bind_6=PD(50.8=62.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGAGGCCTTGCTGGG
R:
CCTCCGGTAGGGGATGTGG
Band lengths:
211-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]