HsaEX6064005 @ hg19
Exon Skipping
Gene
ENSG00000165684 | SNAPC4
Description
small nuclear RNA activating complex, polypeptide 4, 190kDa [Source:HGNC Symbol;Acc:11137]
Coordinates
chr9:139282896-139287046:-
Coord C1 exon
chr9:139286974-139287046
Coord A exon
chr9:139286394-139286558
Coord C2 exon
chr9:139282896-139283043
Length
165 bp
Sequences
Splice sites
3' ss Seq
GAGTGTCTCTGTCGGTGCAGTTT
3' ss Score
5.44
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
CCAGCTTCCAGAAGAGGCCTTGCTGGGAAACAGGCTGGACAGCCACGACTGGGAGAAGATTTCCAATATTAAC
Seq A exon
TTTGAAGGCAGCCGCAGTGCAGAGGAGATCCGGAAGTTCTGGCAGAACTCGGAGCACCCCAGCATCAACAAGCAGGAGTGGAGCAGGGAGGAGGAGGAGCGGCTGCAGGCGATCGCGGCTGCACACGGCCACCTGGAGTGGCAGAAGATTGCAGAGGAGCTGGGG
Seq C2 exon
ACCAGCCGCAGCGCCTTCCAGTGCCTGCAGAAATTCCAGCAGCACAACAAAGCTCTGAAACGCAAGGAGTGGACAGAGGAGGAGGACCGCATGCTCACGCAGCTGGTGCAGGAGATGCGCGTCGGCAGCCACATCCCCTACCGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165684-'7-10,'7-8,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=0.264 C2=0.060
Domain overlap (PFAM):
C1:
PF139211=Myb_DNA-bind_6=FE(34.8=100)
A:
PF139211=Myb_DNA-bind_6=PU(45.9=50.9)
C2:
PF139211=Myb_DNA-bind_6=PD(50.8=62.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCCAGAAGAGGCCTTGC
R:
TTCTGCGGTAGGGGATGTGG
Band lengths:
218-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)