GgaEX6015447 @ galGal3
Exon Skipping
Gene
ENSGALG00000001910 | SNAPC4
Description
NA
Coordinates
chr17:8585948-8586868:+
Coord C1 exon
chr17:8585948-8586020
Coord A exon
chr17:8586334-8586498
Coord C2 exon
chr17:8586721-8586868
Length
165 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTCTCTCTCTTTTAGTTT
3' ss Score
13.36
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
CCAACTTCCAGAAAGTGACTTGTTAGGAGGCAGATTTGATGAGCATGACTGGGAGAAGATTGCAAACGTTCAT
Seq A exon
TTTGATGGACGGCGCAGTTCAGAAGAGCTGAAGAAGTTTTGGCAAAACTGGGAGCATCCAAACATCAACAAGAATGAATGGACAGAGGAGGAAACAGAGAGGCTGAAGGATATTGCAGCTAAACGTGGTTATTTGGACTGGCAGACCATAGCCCAGGAATTGGGG
Seq C2 exon
ACAAACAGGACAGCTTTTCAGTGCTTGCAGAAGTACCAAACCTATAACAAAGACTTGAAAAGGAAAGAATGGACCAGAGATGAAGATAAGATGCTCTTAGAGCTTGTTCAAGAGATGAGAGTGGGAAGCCATATCCCATACAAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001910-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.145 C2=0.000
Domain overlap (PFAM):
C1:
PF139211=Myb_DNA-bind_6=PU(0.1=0.0)
A:
PF139211=Myb_DNA-bind_6=PU(45.9=50.9)
C2:
PF139211=Myb_DNA-bind_6=PD(8.2=10.0),PF116263=Rap1_C=PU(23.5=48.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCCAGAAAGTGACTTGTTAGGA
R:
TTTTCTTGTATGGGATATGGCTTCCC
Band lengths:
218-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]