RnoEX6015969 @ rn6
Exon Skipping
Gene
ENSRNOG00000018845 | Snapc4
Description
small nuclear RNA activating complex, polypeptide 4 [Source:RGD Symbol;Acc:1309048]
Coordinates
chr3:3819161-3820397:-
Coord C1 exon
chr3:3820325-3820397
Coord A exon
chr3:3819813-3819977
Coord C2 exon
chr3:3819161-3819308
Length
165 bp
Sequences
Splice sites
3' ss Seq
CTGTGTTCTCGTGGGTGTAGTTT
3' ss Score
6.47
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
Exon sequences
Seq C1 exon
CCAGCTCCCAGAGGAAGCTTTGTTGGGGAACCGGCTGGACAGCCACGACTGGGAGAAGATTTCCAATGTTAAC
Seq A exon
TTTGAAGGAGCCCGCAGCGCAGAAGAGATCCGGAAGTTCTGGCAGAGCTCTGAGCATCCAAGCATCAATAAGAAGGAGTGGAGCACAGAGGAAGTAGAGAGGCTAAAGACCATCGCTGCCTCACACGGCCACCTCGAGTGGCACTTGGTTGCAGAGGAACTCGGG
Seq C2 exon
ACGAGCCGCAGTGCCTTCCAGTGTCTGCAGAAATTCCAGCAGTACAACAAAGCCCTGAAACGCAAGGAGTGGACAGAAGAGGAAGACCACATGCTCACCCAGCTGGTCCAAGAGATGCGTGTTGGAAACCATATCCCATACCGCAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018845-'9-13,'9-11,10-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.055 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF139211=Myb_DNA-bind_6=PU(45.9=50.9)
C2:
PF139211=Myb_DNA-bind_6=PD(50.8=62.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTCCCAGAGGAAGCTTTG
R:
TCCTGCGGTATGGGATATGGT
Band lengths:
220-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]