DreEX6013254 @ danRer10
Exon Skipping
Gene
ENSDARG00000067673 | snapc4
Description
small nuclear RNA activating complex, polypeptide 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5794]
Coordinates
chr5:50537368-50537961:-
Coord C1 exon
chr5:50537889-50537961
Coord A exon
chr5:50537621-50537785
Coord C2 exon
chr5:50537368-50537518
Length
165 bp
Sequences
Splice sites
3' ss Seq
TCTTGTTTGTGTTCATATAGTTT
3' ss Score
6.96
5' ss Seq
GGGGTAGGG
5' ss Score
3.94
Exon sequences
Seq C1 exon
AACCCTGAAAGACGATCAACTGTTGGGTGATCTGCAAGACGATCATGACTGGGATAAAATATCAAATATCGAT
Seq A exon
TTTGAAGGTTTGCGTCAGGCCGATGATTTGAAGAGGTTCTGGCAGAACTTTTTGCACCCGTCCATTAACAAATCGGTGTGGAAGCAAGACGAGATTTATAAACTACAAGCAGTCGCAGAAGAGTTCAAGATGTGCCATTGGGATAAAATCGCAGAGGCTCTTGGG
Seq C2 exon
ACCAACAGAACAGCTTTCATGTGCTTCCAGACCTACCAGCGCTACATTTCAAAGACATTCAGAAGGACTCATTGGACAGAAGAGGAAGACGATCTCCTCAGAGAACTTGTTGAAAAAATGAGGATCGGGAACTTCATTCCTTACATACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067673-'16-19,'16-18,17-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF139211=Myb_DNA-bind_6=PU(46.7=50.9)
C2:
PF139211=Myb_DNA-bind_6=PD(50.0=58.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTGAAAGACGATCAACTGT
R:
GAATGAAGTTCCCGATCCTCA
Band lengths:
211-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]