MmuEX0022149 @ mm9
Exon Skipping
Gene
ENSMUSG00000035666 | Gtf3c4
Description
general transcription factor IIIC, polypeptide 4 [Source:MGI Symbol;Acc:MGI:2138937]
Coordinates
chr2:28689070-28692036:-
Coord C1 exon
chr2:28691931-28692036
Coord A exon
chr2:28691545-28691647
Coord C2 exon
chr2:28689070-28690893
Length
103 bp
Sequences
Splice sites
3' ss Seq
TAATCCCAACATTCCTATAGTAA
3' ss Score
1.5
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
AGCTTTCATCATTTGGCTGAGCACATGATACGTGTTACAGACCCAGACATGGGGGTGATGAGACAAAGCTAGAATGATCTGAGAAGGCCTCCTAAGATTAGACCTG
Seq A exon
TAAGATGGAAGGCAGAGATGGAAGAATCATGAGGAAGCTGACCAGCTAGCTAACCTGGAGTCCACAAGTACAGCAGAAACAAGAGAGCCCTTACCTCAACAAG
Seq C2 exon
GTTGGCTCAAAAACAGAAGTTGCTGAGTGCAAGGAAAAGTTCGCTTCCTCTAAAGACCCCACCATCAGCCAGACTTTCATGCTAGACAGGATGTTCAACCCCGAGGGGAAGGCCTTGCCCCCAATGCGGGGTTTCAAATACACTAGCTGGTCTCCAATGGGTTGTGATGCAAATGGCAGGTGCCTCTTGGCAGCACTGACCATGGACAATCGCCTGACTGTGCAGGTGAACCTCAACAGACTCCAGTGGGTTCAGCTGGTTGATCTGACGGAGATTTATGGAGACCGTCTTTATGAGACTAGTTATAGACTGTCTAAAAATGAGGCTCCTGAGGGAAATCTCGGGGATTTTGCTGAGTTTCAGAGGAGACACAGTATGCAGACCCCAGTCAGAATGGAATGGTCGAGTATCTGTACCACTCAGCAGGTCAAGCACAACAACGAGTGCCGGGATGTGAGCAGCGTGCTGCTGGCTGTCCTCTTTGAGAACGGGAATATAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035666-'2-2,'2-1,3-2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=0.348 A=NA C2=0.108
Domain overlap (PFAM):
C1:
PF126572=TFIIIC_delta=PD(11.8=33.3)
A:
NA
C2:
PF126572=TFIIIC_delta=PD(69.1=22.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGAGCACATGATACGTGT
R:
ACCCATTGGAGACCAGCTAGT
Band lengths:
254-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types