MmuINT0063577 @ mm9
Intron Retention
Gene
ENSMUSG00000015095 | Fbxw5
Description
F-box and WD-40 domain protein 5 [Source:MGI Symbol;Acc:MGI:1354731]
Coordinates
chr2:25358957-25359847:+
Coord C1 exon
chr2:25358957-25359386
Coord A exon
chr2:25359387-25359699
Coord C2 exon
chr2:25359700-25359847
Length
313 bp
Sequences
Splice sites
5' ss Seq
TCGGTAATG
5' ss Score
6.42
3' ss Seq
TCACCCTGGTCTCCATGCAGGCA
3' ss Score
9.53
Exon sequences
Seq C1 exon
GATGTGGAGTCAGAGAATGTCAACGTGGTAAAGCGGCTCTTTAAGATCCAGAACCTCAATGCCAGCACCATCCGCACAGTGATGGTGGCTGACTGTAGCCGCTTTGATAGCCCGGACCTCCTGCTGGATGCTAGCGACCAGGCTGGGCTCCCCTGCCGAGTCTTTGACCTAGGTGGGGACACTGAAGAAGAGGCCACTGACCCAGGTTTGCACACTTCTGGTTCTGACCACGTCAAGAAAGGTTTACGGCGTGTGTTTGATAGCGTCTTGGATGGACACGGACAGCTATCGGATTGTGCACTGGAGACCAAGGTGGCTGAGCTGCTGGCCCAGGGCCACACCAAGCCTCCAGAGTGCAATGACGCTGACACCAGGAATAAGTACCTCATCTTCACCACTGGCTGCCTCACGTACTCACCGCATCAGATCG
Seq A exon
GTAATGGTGGGCAGGGCAGGGCTGGGCCTGGGACGGTCACCAACCACTGTGTTGCTCCCCAGACCAGCAAGTCCATAGGCAAAGCTTGGCTCATGCATTGAGATACTGTTCTGCCTTGGCACACTTGATCCTGTGTAAGAGTGGTGAAAACCCAGGCAGGGGATTGGTCAGCAAGTGAGCGGGTGCACAATTGTGCTTAAGTCTGAGTGTAGACAGTGTTTGTGGACTCTTAGGGCTGTTCTTGGATTGGGAGTGCCCTGGTGGTAATGTCCTTGCAGGCTCTGGATGACCCCTCACCCTGGTCTCCATGCAG
Seq C2 exon
GCATCAAGCAGATCCTGCCACACCAGATGACAACTGCAGGGCCCGTGCTGGGCGAGGGCCGGGGCTCTGATGCCTTCTTTGATGCCCTGGACCATGTCATTGATGTGCATGGGCACATCATTGGCATGGGCCTGTCTCCTGATAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015095-Fbxw5:NM_013908:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.153 A=NA C2=0.093
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCCAGGTTTGCACACTTC
R:
TGCCCATGCACATCAATGACA
Band lengths:
348-661
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: