GgaINT1013176 @ galGal4
Intron Retention
Gene
ENSGALG00000008966 | FBXW5
Description
F-box/WD repeat-containing protein 5 [Source:RefSeq peptide;Acc:NP_001025865]
Coordinates
chr17:522789-525700:+
Coord C1 exon
chr17:522789-523275
Coord A exon
chr17:523276-525552
Coord C2 exon
chr17:525553-525700
Length
2277 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
TCCTCCTTTCTGTTCCCAAGGGA
3' ss Score
7.97
Exon sequences
Seq C1 exon
GGCATAGAGTCTGAGAATGTGAACGTAGTGAAGAGACTGTTCAAAATCCAGAATCTGAATGCCAGCACTATCCGGACCGTGATGGTGGCTGACTGCAGCCGGTACGATTCCCCAGACCTGCTCCTGGACTACGAGGAGCAGCTGGCTGCCTCTTCCACCTCCACCTGCCCAGTCTTTGATCTCGGCAGTGACAGCGAAGAAGAGGAGTCCAAGCCCAAGCAGACTCCAGAGCCAGCAGTACAGGAAATGCCGGATGATGGGGGTGTGCCAGCAGAGGATGAGCTGCAGCAGTTCTTTGATGATATCATGGGGGGCTGTGTGAGGCCTGCCATGACTGAGGCTGAGCTGGAGAACAAAGTGGCTGAGCTGTTCATACGCAACAGAACTAAACCGCCCGAGGTGAACCTGCTTTCCACGGACAGCAACAGCAAGACAAAATACTTAATTTTCACCACAGGGTGCCTCACCTACTCTCCGCACCAGATAG
Seq A exon
GTAAGGCTGTGGTTGAGCTCCTGGGCACATCAGCCTTCTTAGGGGTGCGGGCTGCAGCTACACTCTGGATGTTAATCTGGAAAAGACCTGTGTTGTTCACTGCTTGTTTGTGGTGAGTCGCAGTTTTGCTCAAGCTGGGTTCTCTGTACAGGACCAGAGGCTTTTGAGACTCCTCCACTAACTGGAGGTGCTTCACTCACAGGCACTTGCCTCATGGTTTTGTTGCTACCAGGCTTGACACTTGGCCACATGAGAATGTCATGGCAAGGGCTAAGCAGGAGACCAGGAGTGAGCTCCTGACTTAACGTCAGCCATGAGCCGTGAAAAAATGGTAAGATAAGAAGGGCAGAGTTTGTCCTGACAGGGGCTTGTGGGAGAGTGTCGGTCATGCGGAAGTGGAGAGGGTGTCAGGACAAGGCAAGTCTGAGCTGCTTGGAGTTTGTGACTGTGTTGCTTGTGCAGTCCCTCATCCCTGTGGGACAGACCTGTTGGTGTGCGGGATGTGGGTGGTTAGAGCTGTACATCTGGCGTGGTGCAGGAGGGGATTGGCTGCGTCACTGGGCATTTGGTGGGGAGCTACTGGTGACGGCTTGCTGGCTCTCAGCGGGGTACAGGGGGTTGTAACTGCAGCACAGGGCAAGCATGGACACTGCTGGGGATCTTTGTCTGGCTTAGAACTTCATGTGCTCATTCCAAGCACAGTTGGTGAGGTGCTGGAACTAGAAGAGACTGAAGGTATAGGAAATCAGTGCAGTGATGAGCAGAGGTAGATAGTCTGGCTGCTTCTCCAAAAGCCCCTGAAAGTAGCCTACATGTTCAGGGGGAAGGACCCTGAAGAAATGTGAGGAGAGCTGCCTCTAGGCAAGAAGGCTTCTGTAAAGCCAGACAACTTCTGTTCCTTTTGGTATGCCCTCTTTCCTGCTGCAGGCTCTTCTAACTTTCCTGGCCTGCACCACTGCAGTAAGGCAGGGAAGGGCTGTTTCCAGATGTGTGGACTGCCTGGAGAAGAGCCGCTTGGTCTTTGTGCACCAAAGATAGGAGTGCAGCCTGAACTACATGGAACTGTGACACTCTGTGCTCTTATCCTCAGCTGCCAGCAGGAGCAGTGTGGCCACAGTATCTCAGCTCCTTGCCCAGCCCTGAGCTGCTGCCAAATGCTTCACTGGCCCTCAGTGCATGCACTGAGTCATTCTCTGTGCAGTGGCTGCCTGCCCTGGGGAGCTGGTGCTGCTGGGTGTCTCTTGGCAGCTGCTGGGAGCCATGCTCCTGGTGCAGCAGGGCCTGCTTATGAGCATCATAGTGTTGTTGCTCGATCTGCTGCATGCAAGCACTTCTGCAGGAGTTCCCTTGGAGCTCCTCTCTCCCTTGGTGCTACCTGAGGTAGGAAGAATCTGCTGGGGAGCTGCAAGTTGGGTGGGAAGCGAAGGGCCTGGGCTACCCAGCTCAGCTGCAGAGATGTAAAGGGCCTTAGGCTGCAGGTGCAGTGTGGGGTAGTCCTGGCCTTGTTCCTCTGTGGGAGGTAGCTAAGTCAAGGGTGGCATTAAAGGTTCCTTGGGCAGAGGGCAGGATCTTCCCACTTGGACACATGGAGGGTGCTGAGTACACTTGTGCCGAAGGGCTGCTGAGGCCTACAGGTGTCCTCTAGGAGACCATCACAAGGGGCTGTGTTTGGGACCTCTGGAGCTTTTAGGGGAGTGAGCTTGACCCACAGCATTGCAGTTTGGAAGCTGTAAACCACTGAGTCTGGTCCTGGTTTCAGCCCTTGTGCCCAGAGCTTCCCTGGGCTGACCCCCAGCTGTGCATCACAGCGACAGGAGGAAACACCAAGTGGTCTGTGCCTGCTGGGCTCTCTGAGGCTGAGCGCTTCAGGAGGTGGGCCCAGCCCTGGGGCTGTGCAGGAAGAGCCTTTGTGCAAGCAGAGAGCCTCTGGGGCCGGCACAGCTCCCTTGTGCTGCAGAGCCATGTAGCCAGGTGAGGCTGCAGCGGCTGGGTTGGCAGTTGGGCACTGGGCTTCTCACCACTGGGGCTGAATGTGCCATTGTGTCACTTAAAGGCACTGTTCTGGCCCAAGGCACTGCTAGTGAGAGCCTGGAAGCAGCTGGCAGGGACAGGAGCCCTGTGCCAGCCCTTCCCTCAGCCCCTGGCTGGAAACGGGCCAGTCCTCTTTTCTTAGCAGTGCTGAGGGAAGTCCCTTCTTGAAGCCAATGGGCTTTCATCAGCCCTGCTGGTCTGTGGCAGAAGCCCATGGATGGCATGATCCTCCTTTCTGTTCCCAAG
Seq C2 exon
GGATTAAAAGGATCCTGCCCCATCAGATGACAACTGCTGGGCCGGTGCTTGGGGAGGAGAGGCGTTCGGATGAGTTCTTTGACTCGCTGGATCACGTCATTGACATCCACGGGCACATAATTGGCATGGGTCTCTCCCCTGACCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008966:ENSGALT00000014582:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.270 A=NA C2=0.120
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]