HsaINT0063059 @ hg38
Intron Retention
Gene
ENSG00000159069 | FBXW5
Description
F-box and WD repeat domain containing 5 [Source:HGNC Symbol;Acc:HGNC:13613]
Coordinates
chr9:136941537-136942466:-
Coord C1 exon
chr9:136942046-136942466
Coord A exon
chr9:136941685-136942045
Coord C2 exon
chr9:136941537-136941684
Length
361 bp
Sequences
Splice sites
5' ss Seq
TCGGTACAC
5' ss Score
2.88
3' ss Seq
CACCGTAGCCCTCCCTGCAGGCA
3' ss Score
5.5
Exon sequences
Seq C1 exon
GATGTGGAGTCAGAGAACGTCAACGTGGTGAAGCGGCTGTTCAAGATCCAGAACCTCAATGCCAGCACCGTCCGCACGGTGATGGTGGCCGACTGCAGCCGCTTCGACAGCCCTGACCTGCTGCTGGAAGCCGGTGACCCGGCCACGTCCCCCTGCCGCATCTTTGACCTGGGCAGCGACAACGAGGAGGTGGTGGCTGGCCCGGCCCCCGCCCACGCCAAGGAGGGCTTGCGGCACTTTCTGGACCGCGTGCTGGAGGGGCGGGCGCAGCCACAGCTGTCGGAGCGCATGCTAGAGACCAAGGTGGCCGAGCTGCTGGCCCAGGGCCACACCAAGCCACCCGAGCGCAGTGCCACAGGCGCCAAGAGCAAGTACCTCATCTTCACCACTGGCTGCCTCACCTACTCCCCACACCAGATCG
Seq A exon
GTACACCCCTGCCGCCATGCTGCCCGCCTCGGTCCTAGGAGCTTGGGGGAGGCCGGGCAGGGGTCCTGAGGGGCAGACAGCAAGCAAGTCCACAGGCAAAGCTGGGATCGTTCACTCGCCCCTGGGGTCACAAGCCCAGACCTGGGGCCTGTGGGATGAGCAGTGAAAACAAACGCAGGCAGGGCCGCTGGCCAGCAAGCAACCGACGGGCCTGATTCAGGTCTGGGGCCCCCGGAGCAGGCAGTGCCCACGGACCTCTGTGGTGCTCACAGCCCCAGAGACACCACTGAGGTAGGAAGCTGCCCTGGAGTGATGTCCTTGGGGCATTGGACAGGGACCCTCACCGTAGCCCTCCCTGCAG
Seq C2 exon
GCATCAAGCAGATCCTGCCACACCAGATGACCACGGCAGGGCCCGTGCTGGGTGAGGGCCGGGGCTCCGATGCCTTCTTCGACGCGCTGGACCACGTCATAGACATACACGGACACATCATCGGCATGGGCCTGTCGCCCGACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159069:ENST00000325285:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=NA C2=0.060
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTTTGACCTGGGCAGCG
R:
CGTCGAAGAAGGCATCGGAG
Band lengths:
347-708
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development