GgaINT0125794 @ galGal3
Intron Retention
Gene
ENSGALG00000008966 | FBXW5
Description
NA
Coordinates
chr17:903492-906403:+
Coord C1 exon
chr17:903492-903978
Coord A exon
chr17:903979-906255
Coord C2 exon
chr17:906256-906403
Length
2277 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
TCCTCCTTTCTGTTCCCAAGGGA
3' ss Score
7.97
Exon sequences
Seq C1 exon
GGCATAGAGTCTGAGAATGTGAACGTAGTGAAGAGACTGTTCAAAATCCAGAATCTGAATGCCAGCACTATCCGGACCGTGATGGTGGCTGACTGCAGCCGGTACGATTCCCCAGACCTGCTCCTGGACTACGAGGAGCAGCTGGCTGCCTCTTCCACCTCCACCTGCCCAGTCTTTGATCTCGGCAGTGACAGCGAAGAAGAGGAGTCCAAGCCCAAGCAGACTCCAGAGCCAGCAGTACAGGAAATGCCGGATGATGGGGGTGTGCCAGCAGAGGATGAGCTGCAGCAGTTCTTTGATGATATCATGGGGGGCTGTGTGAGGCCTGCCATGACTGAGGCTGAGCTGGAGAACAAAGTGGCTGAGCTGTTCATACGCAACAGAACTAAACCGCCCGAGGTGAACCTGCTTTCCACGGACAGCAACAGCAAGACAAAATACTTAATTTTCACCACAGGGTGCCTCACCTACTCTCCGCACCAGATAG
Seq A exon
GTAAGGCTGTGGTTGAGCTCCTGGGCACATCAGCCTTCTTAGGGGTGCGGGCTGCAGCTACACTCTGGATGTTAATCTGGAAAAGACCTGTGTTGTTCACTGCTTGTTTGTGGTGAGTCGCAGTTTTGCTCAAGCTGGGTTCTCTGTACAGGACCAGAGGCTTTTGAGACTCCTCCACTAACTGGAGGTGCTTCACTCACAGGCACTTGCCTCATGGTTTTGTTGCTACCAGGCTTGACACTTGGCCACATGAGAATGTCATGGCAAGGGCTAAGCAGGAGACCAGGAGTGAGCTCCTGACTTAACGTCAGCCATGAGCCGTGAAAAAATGGTAAGATAAGAAGGGCAGAGTTTGTCCTGACAGGGGCTTGTGGGAGAGTGTCGGTCATGCGGAAGTGGAGAGGGTGTCAGGACAAGGCAAGTCTGAGCTGCTTGGAGTTTGTGACTGTGTTGCTTGTGCAGTCCCTCATCCCTGTGGGACAGACCTGTTGGTGTGCGGGATGTGGGTGGTTAGAGCTGTACATCTGGCGTGGTGCAGGAGGGGATTGGCTGCGTCACTGGGCATTTGGTGGGGAGCTACTGGTGACGGCTTGCTGGCTCTCAGCGGGGTACAGGGGGTTGTAACTGCAGCACAGGGCAAGCATGGACACTGCTGGGGATCTTTGTCTGGCTTAGAACTTCATGTGCTCATTCCAAGCACAGTTGGTGAGGTGCTGGAACTAGAAGAGACTGAAGGTATAGGAAATCAGTGCAGTGATGAGCAGAGGTAGATAGTCTGGCTGCTTCTCCAAAAGCCCCTGAAAGTAGCCTACATGTTCAGGGGGAAGGACCCTGAAGAAATGTGAGGAGAGCTGCCTCTAGGCAAGAAGGCTTCTGTAAAGCCAGACAACTTCTGTTCCTTTTGGTATGCCCTCTTTCCTGCTGCAGGCTCTTCTAACTTTCCTGGCCTGCACCACTGCAGTAAGGCAGGGAAGGGCTGTTTCCAGATGTGTGGACTGCCTGGAGAAGAGCCGCTTGGTCTTTGTGCACCAAAGATAGGAGTGCAGCCTGAACTACATGGAACTGTGACACTCTGTGCTCTTATCCTCAGCTGCCAGCAGGAGCAGTGTGGCCACAGTATCTCAGCTCCTTGCCCAGCCCTGAGCTGCTGCCAAATGCTTCACTGGCCCTCAGTGCATGCACTGAGTCATTCTCTGTGCAGTGGCTGCCTGCCCTGGGGAGCTGGTGCTGCTGGGTGTCTCTTGGCAGCTGCTGGGAGCCATGCTCCTGGTGCAGCAGGGCCTGCTTATGAGCATCATAGTGTTGTTGCTCGATCTGCTGCATGCAAGCACTTCTGCAGGAGTTCCCTTGGAGCTCCTCTCTCCCTTGGTGCTACCTGAGGTAGGAAGAATCTGCTGGGGAGCTGCAAGTTGGGTGGGAAGCGAAGGGCCTGGGCTACCCAGCTCAGCTGCAGAGATGTAAAGGGCCTTAGGCTGCAGGTGCAGTGTGGGGTAGTCCTGGCCTTGTTCCTCTGTGGGAGGTAGCTAAGTCAAGGGTGGCATTAAAGGTTCCTTGGGCAGAGGGCAGGATCTTCCCACTTGGACACATGGAGGGTGCTGAGTACACTTGTGCCGAAGGGCTGCTGAGGCCTACAGGTGTCCTCTAGGAGACCATCACAAGGGGCTGTGTTTGGGACCTCTGGAGCTTTTAGGGGAGTGAGCTTGACCCACAGCATTGCAGTTTGGAAGCTGTAAACCACTGAGTCTGGTCCTGGTTTCAGCCCTTGTGCCCAGAGCTTCCCTGGGCTGACCCCCAGCTGTGCATCACAGCGACAGGAGGAAACACCAAGTGGTCTGTGCCTGCTGGGCTCTCTGAGGCTGAGCGCTTCAGGAGGTGGGCCCAGCCCTGGGGCTGTGCAGGAAGAGCCTTTGTGCAAGCAGAGAGCCTCTGGGGCCGGCACAGCTCCCTTGTGCTGCAGAGCCATGTAGCCAGGTGAGGCTGCAGCGGCTGGGTTGGCAGTTGGGCACTGGGCTTCTCACCACTGGGGCTGAATGTGCCATTGTGTCACTTAAAGGCACTGTTCTGGCCCAAGGCACTGCTAGTGAGAGCCTGGAAGCAGCTGGCAGGGACAGGAGCCCTGTGCCAGCCCTTCCCTCAGCCCCTGGCTGGAAACGGGCCAGTCCTCTTTTCTTAGCAGTGCTGAGGGAAGTCCCTTCTTGAAGCCAATGGGCTTTCATCAGCCCTGCTGGTCTGTGGCAGAAGCCCATGGATGGCATGATCCTCCTTTCTGTTCCCAAG
Seq C2 exon
GGATTAAAAGGATCCTGCCCCATCAGATGACAACTGCTGGGCCGGTGCTTGGGGAGGAGAGGCGTTCGGATGAGTTCTTTGACTCGCTGGATCACGTCATTGACATCCACGGGCACATAATTGGCATGGGTCTCTCCCCTGACCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008966:ENSGALT00000014582:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.270 A=NA C2=0.080
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]