DreINT0067827 @ danRer10
Intron Retention
Gene
ENSDARG00000099139 | fbxw5
Description
F-box and WD repeat domain containing 5 [Source:ZFIN;Acc:ZDB-GENE-040426-2571]
Coordinates
chr5:53821359-53821963:-
Coord C1 exon
chr5:53821780-53821963
Coord A exon
chr5:53821507-53821779
Coord C2 exon
chr5:53821359-53821506
Length
273 bp
Sequences
Splice sites
5' ss Seq
TAGGTCAAT
5' ss Score
0.55
3' ss Seq
TGAGTTGATGTGTGTTTTAGGTA
3' ss Score
9.27
Exon sequences
Seq C1 exon
GGTTGTCAGAGCATAGCCACTCGTGAGCGAGAGTTAGAGACGAAGGTGGCCAGGCTGATGGGCAGCAGACGCACCAAAGCTCCTGAACTAAATCTGGTGTCTCCTTCAAATGTTGGAGAAGGAGAGGACATGACCTATCTGCTCTTCACCACTGGCAGCCTCACATATTCCCCTCACCAAATAG
Seq A exon
GTCAATTGCTGATTGTTTAATCCGCTTATTCCTTACATCAGGGGTTATCAAACTCAATTCCTAGAGGGCCGCAGCCCTGTATAGTTTAGTTCCAACTCTGGTTCAGTACACTTACCTGTAGGTTTCCAACAAGCCTAGATCACTCAGTTAGTTTGATCAGGTGTGTTTAATTAGGGTTGGAACTAAACTCTGCAGAGCTGCGGCCCTCCAGGAACTGAGTTTGATACCTGTGACTTGGATGAACTGTTCATATTGAGTTGATGTGTGTTTTAG
Seq C2 exon
GTATCAAGCGGATTATGCCTGATCAAATGACAACATGTGGTCCTGTCTTGGGCGAGGAGCGCAGTTCTGAGGAATTCTTTGACTCGTTGGATCATGTGATCGACATACACGGCCACATCATCGGCATGGGGCTGTCACCTGACCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099139:ENSDART00000165719:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.355 A=NA C2=0.100
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGCATAGCCACTCGTGA
R:
ATGATGTGGCCGTGTATGTCG
Band lengths:
300-573
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]