RnoINT0060108 @ rn6
Intron Retention
Gene
ENSRNOG00000028674 | Fbxw5
Description
F-box and WD repeat domain containing 5 [Source:RGD Symbol;Acc:1305661]
Coordinates
chr3:2729225-2730111:+
Coord C1 exon
chr3:2729225-2729654
Coord A exon
chr3:2729655-2729963
Coord C2 exon
chr3:2729964-2730111
Length
309 bp
Sequences
Splice sites
5' ss Seq
TCGGTAATG
5' ss Score
6.42
3' ss Seq
TCACCCTGCTCTCCACGCAGGCA
3' ss Score
10.66
Exon sequences
Seq C1 exon
GATGTGGAGTCAGAGAACGTCAACGTGGTAAAGCGGCTCTTTAAGATCCAGAACCTCAATGCCAGCACCATCCGCACCGTGATGGTGGCTGACTGCAGCCGCTTTGATAGCCCGGACCTCCTGCTGGATGCTGGTGACCAGGCTGGGCTCCCCTGCCGAGTCTTTGACCTAGGTGGGGACACTGAAGAAGAGGCCACTGACCCAGGTTTGCACACCTCTGGTTCTGGCCATGTCAAGGAAGGTTTACGGCGTGTGTTTGATAGCGTCCTGGATGGACATGGACAGCTGTCAGATTGTGCACTGGAGACCAAGGTGGCTGAGCTGCTGGCCCAGGGCCACACCAAGCCCCCAGAGTGTCCTGACGCTGACAGCAGGAACAAGTACCTCATCTTCACCACTGGCTGCCTCACGTACTCACCTCATCAGATCG
Seq A exon
GTAATGGTGGGCAGGGCAGGGCCGGGCCTGGGAGGGTCAGCAGCCATTGTGCTGCTCCCCGGACCAGCAAGGCCCCTTAGGTGAAGCTTGGCTCACGCACTGGGATACTGTTCTGGCCCTGGCACACTTGAGTAAGAGTGGTGGAAACCCAGGCGGAGATTGGTCAGCAAGTGAGCAGATGTGCAACTGTGCTTGAGTCTGAGTGTAGACAGTGTTTGTGGACTCTTAGGCCTGTTCTTGGATTGGGAGTGCCCTGGTGGTGATGTCCTTGCAGGCTCTGGATGACCCCTCACCCTGCTCTCCACGCAG
Seq C2 exon
GCATCAAGCAGATCCTGCCGCACCAGATGACAACTGCAGGGCCCGTGCTGGGCGAGGGCCGGGGCTCTGATGCCTTCTTTGATGCCCTGGACCATGTCATTGATGTGCATGGGCACATCATTGGCATGGGCCTGTCTCCCGATAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028674:ENSRNOT00000034089:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=NA C2=0.100
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTTTGCACACCTCTGGTT
R:
TGCCCATGCACATCAATGACA
Band lengths:
343-652
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]