MmuEX0018615 @ mm9
Exon Skipping
Gene
ENSMUSG00000000392 | Fap
Description
fibroblast activation protein [Source:MGI Symbol;Acc:MGI:109608]
Coordinates
chr2:62386627-62394256:-
Coord C1 exon
chr2:62394158-62394256
Coord A exon
chr2:62392802-62392896
Coord C2 exon
chr2:62386627-62386699
Length
95 bp
Sequences
Splice sites
3' ss Seq
GCTTTCTTTTGTGTTTAAAGAAC
3' ss Score
6.32
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
TTTACAAACCTGAAGGAAACACAAAGAGAGCTCTTACCTTGAAGGATATTTTAAATGGAACATTCTCATATAAAACATATTTTCCCAACTGGATTTCAG
Seq A exon
AACAAGAATATCTTCATCAATCTGAGGATGATAACATAGTATTTTATAATATTGAAACAAGAGAATCATATATCATTTTGAGTAATAGCACCATG
Seq C2 exon
GGAATTTGTAAGAGGATACGAGCTCCCTCGTCCAATTCAGTATCTATGCTGGTCGCCTGTTGGGAGTAAATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000392_MULTIEX1-3/13=2-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0093016=DPPIV_N=PU(3.5=40.6)
C2:
PF0093016=DPPIV_N=FE(6.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAACCTGAAGGAAACACAAAGA
R:
ATTTACTCCCAACAGGCGACC
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: