HsaEX6016267 @ hg38
Exon Skipping
Gene
ENSG00000078098 | FAP
Description
fibroblast activation protein alpha [Source:HGNC Symbol;Acc:HGNC:3590]
Coordinates
chr2:162224466-162226621:-
Coord C1 exon
chr2:162226523-162226621
Coord A exon
chr2:162225483-162225577
Coord C2 exon
chr2:162224466-162224540
Length
95 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTTTCTTGTTTAAAGGAC
3' ss Score
8.83
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
TTCATAACTCTGAAGAAAATACAATGAGAGCACTCACACTGAAGGATATTTTAAATGGAACATTTTCTTATAAAACATTTTTTCCAAACTGGATTTCAG
Seq A exon
GACAAGAATATCTTCATCAATCTGCAGATAACAATATAGTACTTTATAATATTGAAACAGGACAATCATATACCATTTTGAGTAATAGAACCATG
Seq C2 exon
AAAAGTGTGAATGCTTCAAATTACGGCTTATCACCTGATCGGCAATTTGTATATCTAGAAAGTGATTATTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078098-'12-19,'12-18,13-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0093016=DPPIV_N=PU(3.5=40.6)
C2:
PF0093016=DPPIV_N=PU(19.7=56.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCTGAAGAAAATACAATGAGAGC
R:
TCACTTTCTAGATATACAAATTGCCG
Band lengths:
159-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains