GgaEX6042573 @ galGal3
Exon Skipping
Gene
ENSGALG00000011099 | FAP
Description
NA
Coordinates
chr7:22648688-22651003:+
Coord C1 exon
chr7:22648688-22648783
Coord A exon
chr7:22650693-22650787
Coord C2 exon
chr7:22650929-22651003
Length
95 bp
Sequences
Splice sites
3' ss Seq
CATTTATCTTGTTTTTTAAGATA
3' ss Score
8.07
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
TTGTCACCACAGTTGATGGTCCTAGAGCTCTTACACTGGATGATTACTTGAATGGAAATTTTCAATATAAAACATATTTTCCATACTGGGTGTCAG
Seq A exon
ATAGTGAATATCTTCACCAGAATCAAGAAGATGATATTATTCTTTTCAATGTTGACATGAACTACCTAACTACCATCATGACCAACAGCACAATG
Seq C2 exon
AAACAGGTTAATGCTTCAAATTATGTGATGTCATCAGACAAATACTTCATAGCTCTGGAGAGCAATTATTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011099-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0093016=DPPIV_N=PU(3.8=56.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCACCACAGTTGATGGTCC
R:
TCCAGAGCTATGAAGTATTTGTCTGA
Band lengths:
154-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]