RnoEX0034890 @ rn6
Exon Skipping
Gene
ENSRNOG00000005679 | Fap
Description
fibroblast activation protein, alpha [Source:RGD Symbol;Acc:621253]
Coordinates
chr3:48517936-48519961:-
Coord C1 exon
chr3:48519863-48519961
Coord A exon
chr3:48518888-48518982
Coord C2 exon
chr3:48517936-48518010
Length
95 bp
Sequences
Splice sites
3' ss Seq
GCTTTCTTTTGTGTTTAAAGAGC
3' ss Score
5.9
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
TTTACAGCCCTGAAGGCAACACAGGAAGATCTCTTACCCTGAAGGATATTTTAAATGGAACATTCTCCTATAAAACATATTTTCCAAACTGGATTTCAG
Seq A exon
AGCAAGAATATCTTCATCAATCTGAGGATGATAACATAGTCTTTTATAATATTGAAACAAGAGAATCCTATATCATTTTGAGTAATAGCACCATG
Seq C2 exon
AAAAGTGTGAATGCTACAGACTATGGCCTGTCACCTGATCGGCAGTTTATATATCTTGAAAGTGATTATTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005679-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0093016=DPPIV_N=PU(3.8=56.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAACACAGGAAGATCTCT
R:
TCACTTTCAAGATATATAAACTGCCG
Band lengths:
151-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]